| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,772,178 – 17,772,278 |
| Length | 100 |
| Max. P | 0.586789 |
| Location | 17,772,178 – 17,772,278 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 85.07 |
| Shannon entropy | 0.24559 |
| G+C content | 0.44932 |
| Mean single sequence MFE | -24.40 |
| Consensus MFE | -15.70 |
| Energy contribution | -16.58 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17772178 100 - 23011544 ------CUGAUGCUGUGGGUACUUUUUACCUCUGCAUUGGAAAGAGGAACUCUACGCUGCACUGCCUUCGACUUAGACAAUUUUUAAAUUGUCUUCCUCCCGCUCG--- ------(..((((...(((((.....)))))..))))..)...((((((......((......))..........(((((((....))))))))))))).......--- ( -26.80, z-score = -3.12, R) >droSim1.chr2L 17452436 100 - 22036055 ------CUGAGGCUGUGAAUACUUUUUACCUCUGCAUUGGAAAGAGGAACUCUACGCUGCACUGCCUGCGACUUAGACAAUUUUUAAAUUGUCUUCCUCCCGCUCG--- ------...((((.(((...........(((((.........)))))............))).))))(((....((((((((....))))))))......)))...--- ( -25.30, z-score = -2.59, R) >droSec1.super_7 1406481 106 - 3727775 CUGAAACUGAGGCUGUGAAUACUUUUUACCUCUGCAUUGGAAAGAGGAACUCUACGCUGCACUGCCUGCGACUUAGACAAUUUUUAAAUUGUCUUCCUCCCGCUCC--- .........((((.(((...........(((((.........)))))............))).))))(((....((((((((....))))))))......)))...--- ( -25.30, z-score = -2.35, R) >droYak2.chr2R 17810493 103 + 21139217 ------CUGAAGCUGUGGGUACUUGUUACCUCUCCAUUGAAAGGAAGAACUCUACGCUGCACUGCCUUCGACUUAGACAAUUUUUAAAUUGUCUUAUCUUGUCUGCUCA ------..(((((((..((((...(((.(((.((....)).)))...)))..))).)..))..).))))(((..((((((((....))))))))......)))...... ( -21.60, z-score = -0.84, R) >droEre2.scaffold_4845 16102049 103 + 22589142 ------CUGAAGCUGUGGGUACUUGUUACCUCUCCAUUGGAAAGAAGAUCUCUACGCCGCACUGCCUUCGACUUAGACAAUUUUUAAAUUGUCUUCUCUUGUCUGCCCG ------..((((((((((((((((.((.((........)).)).))).....))).)))))..).))))(((..((((((((....))))))))......)))...... ( -23.00, z-score = -1.44, R) >consensus ______CUGAAGCUGUGGGUACUUUUUACCUCUGCAUUGGAAAGAGGAACUCUACGCUGCACUGCCUUCGACUUAGACAAUUUUUAAAUUGUCUUCCUCCCGCUCC___ .......((.(((.((((((.((((((.((........)).)))))).)))).))))).)).............((((((((....))))))))............... (-15.70 = -16.58 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:45 2011