| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,764,240 – 17,764,341 |
| Length | 101 |
| Max. P | 0.597039 |
| Location | 17,764,240 – 17,764,341 |
|---|---|
| Length | 101 |
| Sequences | 10 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.25 |
| Shannon entropy | 0.50871 |
| G+C content | 0.44814 |
| Mean single sequence MFE | -19.79 |
| Consensus MFE | -9.93 |
| Energy contribution | -9.91 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.597039 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17764240 101 + 23011544 UACAUACCGAC----AGCCCUCC--CCCCU-GUCACAUGUGCGU--CCGAUUUAUCACUGAAUCGCAUUUUAACCACAGGAUAUUUGAUCUUGU-GCCAUUUGACAUAAGU (((((...(((----((......--...))-)))..))))).((--((((((((....))))))).........((((((((.....)))))))-)......)))...... ( -22.10, z-score = -2.54, R) >droSim1.chr2L 17444486 107 + 22036055 UACAUACCAACCCCCACCCCUCCUCCCCCU-GUCACAUGUGCGU--CCGAUUUAUCACUGAAUCGCAUUUUAACCACAGGAUAUUUGAUCUUGU-GCCAUUUGACAUAAGU .............................(-((((.(((.((..--.(((((((....)))))))..........(((((((.....)))))))-))))).)))))..... ( -21.00, z-score = -3.18, R) >droSec1.super_7 1398564 107 + 3727775 UACAUACCAACCCCCACCCCUCCUCCCCCU-GUCACAUGUGCGU--CCGAUUUAUCACUGAAUCGCAUUUUAACCACAGGAUAUUUGAUCUUGU-GCCAUUUGACAUAAGU .............................(-((((.(((.((..--.(((((((....)))))))..........(((((((.....)))))))-))))).)))))..... ( -21.00, z-score = -3.18, R) >droYak2.chr2R 17802622 95 - 21139217 ------------UACAUCGCCACCCCCCCU-GUCACAUGUGCGU--CCGAUUUAUCACUGAAUCGCAUUUUAACCACAGGAUAUUUGAUCUUGU-GCCAUUUGACAUAAGU ------------.................(-((((.(((.((..--.(((((((....)))))))..........(((((((.....)))))))-))))).)))))..... ( -21.00, z-score = -2.36, R) >droEre2.scaffold_4845 16093633 94 - 22589142 ------------UACAUU-CCAGCCCCCCU-GUCACAUGUGCGC--CCGAUUUAUCACUGAAUCGCAUUUUAACCACAGGAUAUUUGAUCUUGU-GCCAUUUGACAUAAGU ------------......-..........(-((((.(((.((..--.(((((((....)))))))..........(((((((.....)))))))-))))).)))))..... ( -21.00, z-score = -2.58, R) >droAna3.scaffold_12916 13053277 94 - 16180835 --------------UACCUUCCCCGCCCUCGGUCACAUGUGCGU--CCCAUUUAUCACUGAAUCGCAUUUUAACCACAGGAUAUUUGAUCUGCU-GCCAUUUGACACAAGU --------------.................((((.(((.((((--..((..((((.(((................)))))))..))....)).-))))).))))...... ( -14.29, z-score = 0.19, R) >droPer1.super_8 2111899 110 - 3966273 CGCAUGCCGGAGACUCCCACUCGCCCCUCCAGUCACAUGUGUGUGUCGCAUUUAUCACUGAAUCGCAUUUUAACCACAGGAUAUUUGAUCUUGU-GCCAUUUGACAUAAGU (((((((.((((..............)))).)...))))))(((((((((((((....))))).))........((((((((.....)))))))-)......))))))... ( -26.34, z-score = -1.12, R) >dp4.chr4_group3 1051587 110 - 11692001 CGCAUGCCGGAGACUCCCACUCGCCCCUCAAGUCACAUGUGUGUGUCGCAUUUAUCACUGAAUCGCAUUUUAACCACAGGAUAUUUGAUCUUGU-GCCAUUUGACAUAAGU ((((((...(((..............)))......))))))(((((((((((((....))))).))........((((((((.....)))))))-)......))))))... ( -23.84, z-score = -0.24, R) >droWil1.scaffold_180764 699704 80 + 3949147 ----------------------------UAUGUG-UAUGCGUGA--CACAUUUAUCACUGAAUCGCAUUUUAACCGCAGGAUAUUUGAUCUUCAAGCCAUUUGACAGAAGU ----------------------------(((((.-...))))).--..((..((((.(((................)))))))..)).((((((((...))))).)))... ( -9.59, z-score = 1.74, R) >droVir3.scaffold_12963 16764900 106 + 20206255 --CCCAAACUACCCGCCCUACCCCCUUGUUCGUGGCAUGUGUGU--CGCAUUUAUCACUGAAUCGCAUUUUAACCACAGGAUAUUUGAUCUGCU-GCCAUUUGACAUAAGU --......................(((((((((((((.((..((--((....((((.(((................)))))))..))))..)))-)))))..)).))))). ( -17.79, z-score = 0.09, R) >consensus __CAU_CC_____CCACCCCUCCCCCCCCU_GUCACAUGUGCGU__CCCAUUUAUCACUGAAUCGCAUUUUAACCACAGGAUAUUUGAUCUUGU_GCCAUUUGACAUAAGU ...............................((((.(((.((..........((((.(((................)))))))............))))).))))...... ( -9.93 = -9.91 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:44 2011