| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,748,486 – 17,748,595 |
| Length | 109 |
| Max. P | 0.804187 |
| Location | 17,748,486 – 17,748,595 |
|---|---|
| Length | 109 |
| Sequences | 12 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 78.90 |
| Shannon entropy | 0.45060 |
| G+C content | 0.38348 |
| Mean single sequence MFE | -24.03 |
| Consensus MFE | -13.35 |
| Energy contribution | -13.35 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.804187 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 17748486 109 - 23011544 -----UUGUUGCUCAUAUUUUCCGCUGCAUUCCGUUGCUAAUUGAGGACAAUUAAAAUUUAUUAGCUGGCAACAGCAAUUAAAUGCAGACACCCAGAGGGCCAGCGAGUAAUUU -----..(((((((.........((((((((..(((..((((((....))))))..........((((....)))))))..))))))).).(((...))).....))))))).. ( -29.50, z-score = -1.86, R) >droSim1.chr2L 17427766 109 - 22036055 -----UUGCUGCUCAUAUUUUCCGCUGCAUUCCGUUGCUAAUUGAGGACAAUUAAAAUUUAUUAGCUGGCAACAGCAAUUAAAUGCAGACACCCAGAGAGCCAGCGAGUAAUUU -----(((((((((..........(((((((..(((..((((((....))))))..........((((....)))))))..))))))).........))).))))))....... ( -30.71, z-score = -2.58, R) >droSec1.super_7 1382638 109 - 3727775 -----UUGCUGCUCAUAUUUUCCGCUGCAUUCCGUUGCUAAUUGAGGACAAUUAAAAUUUAUUAGCUGGCAACAGCAAUUAAAUGCAGACACCCAGAGAGCCAGCGAGUAAUUU -----(((((((((..........(((((((..(((..((((((....))))))..........((((....)))))))..))))))).........))).))))))....... ( -30.71, z-score = -2.58, R) >droYak2.chr2R 17786764 109 + 21139217 -----UUGCUGCUCAUAUUUUCCGCUGCAUUCCGUUGCUAAUUGAGGACAAUUAAAAUUUAUUAGCUGGCAACAGCAAUUAAAUGCAGACACCAAGCAAGCCAUCGAGUAAUUU -----....(((((.........((((((((..(((..((((((....))))))..........((((....)))))))..))))))).).....(....)....))))).... ( -23.80, z-score = -0.60, R) >droEre2.scaffold_4845 16078072 109 + 22589142 -----UUGCUGCUCAUAUUUUCCGCUGCAUUCCGUUGCUAAUUGAGGACAAUUAAAAUUUAUUAGCUGGCAACAGCAAUUAAAUGCAGACACCCAGCAAGCAAUCGAGUAAUUU -----((((((((...........(((((((..(((..((((((....))))))..........((((....)))))))..)))))))......))).)))))........... ( -25.83, z-score = -1.28, R) >droAna3.scaffold_12916 13039160 108 + 16180835 -----UCGCAGACCGUAUUUUCCACUGCAUUCCGUUGCUAAUUGAGGACAAUUAAAAUUUAUUAGCUGGCAACAGCAAUUAAAUGCAGACACCCCGCCAG-AAACGAGAGAUUU -----..((((.............)))).(((((((((((((((....))))))..(((((...((((....))))...)))))...........))...-.)))).))).... ( -20.52, z-score = -0.88, R) >dp4.chr4_group3 1030784 108 + 11692001 -----UUUUUGUCCAUAUUUUCCACUGCAUUCCGUUGCUAAUUGAGGACAAUUAAAAUUUAUUAGCUGGCAACAGCAAUUAAAUGCAGAGGCCCGUCACAGAACGAAAGAUUU- -----.((((((.........((.(((((((..(((..((((((....))))))..........((((....)))))))..))))))).))......))))))(....)....- ( -24.86, z-score = -2.01, R) >droPer1.super_8 2091060 108 + 3966273 -----UUUUUGUCCACAUUUUCCACUGCAUUCCGUUGCUAAUUGAGGACAAUUAAAAUUUAUUAGCUGGCAACAGCAAUUAAAUGCAGAGGCCCGUCACAGAACGAAAGAUUU- -----.((((((..((.....((.(((((((..(((..((((((....))))))..........((((....)))))))..))))))).))...)).))))))(....)....- ( -24.90, z-score = -2.01, R) >droWil1.scaffold_180764 3230432 113 + 3949147 CUUCUGUUUCGUCUCCUUCUUGUACAGCAUUCCGUUGCUAAUUGAUCACAAUUAAAAUUUAUUAGCUGGCAACAGCAAUUAAAAUACCCCAAGAACCAAAGAGUGAGAGAUUU- ....(.(((((.(((.((((((....(((......)))((((((....))))))..........((((....)))).............)))))).....)))))))).)...- ( -22.70, z-score = -1.86, R) >droVir3.scaffold_12963 16739467 101 - 20206255 ---UUUUUGUAAAUACAUUUUCCACUGCAUUCCGCUGCUAAUUGACGACAAUUAAAAUUUAUUAGCUGGCAACAGCAAUUAAACGCA-AGACCCG-CACGCAAUUU-------- ---..............................(((((((((((....))))))..........((((....)))).......(...-.)....)-)).)).....-------- ( -17.90, z-score = -1.24, R) >droMoj3.scaffold_6500 21703177 99 - 32352404 -----UUUUUUAAUGCAUUUUCCGCUGCAUUCCGUUGCUAAUUGACGACAAUUAAAAUUUAUUAGCUGGCAACAGCAAUUAAACGCA-AGACCCG-CACGCAAUUU-------- -----......((((((........))))))..(((((((((((....))))))..........((((....)))).......(...-.).....-...)))))..-------- ( -20.50, z-score = -1.45, R) >droGri2.scaffold_15252 14157151 97 - 17193109 ----UUUUUUUAA---AUUUUCCACUGCAUUCCGUUGCUAAUUGACGACAAUUAAAAUUUAUUAGCUGGCAACAGCAAUUAAACGCA-AGACCCG-CACGCAAUUU-------- ----.........---.................(((((((((((....))))))..........((((....)))).......(...-.).....-...)))))..-------- ( -16.40, z-score = -1.16, R) >consensus _____UUGUUGCUCAUAUUUUCCACUGCAUUCCGUUGCUAAUUGAGGACAAUUAAAAUUUAUUAGCUGGCAACAGCAAUUAAAUGCAGACACCCAGCAAGCAAUCGAGUAAUU_ ..........................(((......)))((((((....))))))..........((((....))))...................................... (-13.35 = -13.35 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:44 2011