| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,743,202 – 17,743,261 |
| Length | 59 |
| Max. P | 0.650749 |
| Location | 17,743,202 – 17,743,261 |
|---|---|
| Length | 59 |
| Sequences | 8 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 77.50 |
| Shannon entropy | 0.43450 |
| G+C content | 0.52303 |
| Mean single sequence MFE | -19.73 |
| Consensus MFE | -9.67 |
| Energy contribution | -11.63 |
| Covariance contribution | 1.95 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650749 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17743202 59 + 23011544 GAGGAGGGUCGAAAAUCAGGUUUGUCCCUCCUCUUAAUGUAUCCGGC--UACGGCAACUGA ((((((((.((((.......)))).))))))))............((--....))...... ( -22.60, z-score = -2.87, R) >droSim1.chr2L 17422611 59 + 22036055 GAGGAGGGUCGAAAAUCAGGUUUGUCCCUCCUCUUAAUGUAUCCGGC--GACGGCAACAGA ((((((((.((((.......)))).))))))))....(((..(((..--..)))..))).. ( -25.20, z-score = -3.54, R) >droSec1.super_7 1377471 59 + 3727775 GAGGAGGGUCGAAAAUCAGGUUUGUCCCUCCUCUUAAUGUAUCCGGC--UACGGCAACAGA ((((((((.((((.......)))).))))))))....(((..(((..--..)))..))).. ( -23.70, z-score = -3.34, R) >droYak2.chr2R 17781598 58 - 21139217 GAGGAGGGUCGAAAAUCAGGUUUGUUCCUCCUCUUAAUGUAUCCGGC--UACGGCA-CAGA (((((((..((((.......))))..)))))))....(((..(((..--..))).)-)).. ( -19.70, z-score = -2.11, R) >droEre2.scaffold_4845 16073055 59 - 22589142 GAGGAGGGUCGAAAAUCAGGUUUGUCCCUCCUCCUAAUGUAUGCGGC--UACGGCAACAGA ((((((((.((((.......)))).))))))))........((..((--....))..)).. ( -23.90, z-score = -3.14, R) >droAna3.scaffold_12916 13034676 59 - 16180835 UGGGAGGGUCGGAAUUCUGGUUUGGCCCUCCUCUCAAUGUAUCCGGC--AGUGGAAACAGA .((((((((((((.......)))))))))))).....(((.((((..--..)))).))).. ( -22.90, z-score = -1.74, R) >dp4.chr4_group3 1024594 54 - 11692001 AAGCAAGGGCGAGGUAGAGGGU-------CCGCCUAAUGUAUCCGGGAAUAUGGCAACAGA ..(((.(((((.((.......)-------))))))..)))...........((....)).. ( -9.90, z-score = 1.15, R) >droPer1.super_8 2084860 54 - 3966273 AAGCAAGGGCGAGGUAGAGGGU-------CCGCCUAAUGUAUCCGGGAAUAUGGCAACAGA ..(((.(((((.((.......)-------))))))..)))...........((....)).. ( -9.90, z-score = 1.15, R) >consensus GAGGAGGGUCGAAAAUCAGGUUUGUCCCUCCUCUUAAUGUAUCCGGC__UACGGCAACAGA ..((((((.((((.......)))).))))))......(((..(((......)))..))).. ( -9.67 = -11.63 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:43 2011