| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,737,215 – 17,737,270 |
| Length | 55 |
| Max. P | 0.806816 |
| Location | 17,737,215 – 17,737,270 |
|---|---|
| Length | 55 |
| Sequences | 8 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 83.37 |
| Shannon entropy | 0.31020 |
| G+C content | 0.33969 |
| Mean single sequence MFE | -10.19 |
| Consensus MFE | -9.12 |
| Energy contribution | -9.51 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.806816 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17737215 55 - 23011544 -------AAUUGCUUUUCAAAUAUUUGGUUGACAUGGAAAGCAUUUACGGUCGAUACAACGG -------...(((((((((......((.....)))))))))))....((..........)). ( -8.20, z-score = -0.63, R) >droSim1.chr2L 17416082 55 - 22036055 -------AAUUGCUUUUCAAAUAUUUGGUUGACAUGGAAAGCAAUUACGGUCGAUACAACAC -------((((((((((((......((.....))))))))))))))................ ( -10.90, z-score = -2.19, R) >droSec1.super_7 1371579 55 - 3727775 -------AAUUGCUUUUUAAAUAUUUGGUUGACAUGGAAAGCAAUUACGGUCGAUACAACAC -------((((((((((((......((.....))))))))))))))................ ( -8.80, z-score = -1.44, R) >droYak2.chr2R 17775522 55 + 21139217 -------AAUUGCAUUUCAAAUAUUUGGUUGACAUGGAAAGCAAUUACGGUCGAUGCAUCAA -------...((((((........(((.((........)).)))........)))))).... ( -7.29, z-score = 0.54, R) >droEre2.scaffold_4845 16067529 54 + 22589142 --------AUUGCUUUUCAAAUAUUUGGUUGACAUGGAAAGCAAUUACGCUCGAUACAACAG --------(((((((((((......((.....)))))))))))))................. ( -9.40, z-score = -1.53, R) >droAna3.scaffold_12916 13028875 62 + 16180835 AAUUGCAAAUUGCUUUUCAAAUAUUUGGUUGACAUGGCAAGCAAUUACCUUCGAUGCCAGAG ((((((...(((((..((((........))))...)))))))))))................ ( -10.50, z-score = 0.04, R) >dp4.chr4_group3 1017602 62 + 11692001 AAUUGCAAAUUGCUUUUCAAAUAUUUGGUUGUCAUGGAAAGCAAUUACACUUGAAACAAGAG .......((((((((((((.(((......)))..))))))))))))...((((...)))).. ( -13.20, z-score = -1.83, R) >droPer1.super_8 2077605 62 + 3966273 AAUUGCAAAUUGCUUUUCAAAUAUUUGGUUGUCAUGGAAAGCAAUUACACUUGAAACAAGAG .......((((((((((((.(((......)))..))))))))))))...((((...)))).. ( -13.20, z-score = -1.83, R) >consensus _______AAUUGCUUUUCAAAUAUUUGGUUGACAUGGAAAGCAAUUACGGUCGAUACAACAG .......((((((((((((...............))))))))))))................ ( -9.12 = -9.51 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:42 2011