| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,752,981 – 1,753,095 |
| Length | 114 |
| Max. P | 0.730425 |
| Location | 1,752,981 – 1,753,095 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 76.75 |
| Shannon entropy | 0.42716 |
| G+C content | 0.53911 |
| Mean single sequence MFE | -28.61 |
| Consensus MFE | -18.50 |
| Energy contribution | -18.78 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.730425 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1752981 114 + 23011544 CCCGUUGCCCCGUUUUCCCCCUUUUCCACCAUAUACCACCACAUGUGGCCCGCUUUUCGACCCUUUGAGCCAUGUGCGGUAUUGCAGCUGUCAAAGCAGCCGGCAUGCGGAAAA .((((((((............................(((.((((((((.......((((....)))))))))))).)))......(((((....))))).)))).)))).... ( -31.81, z-score = -1.59, R) >droSim1.chr2L 1744289 95 + 22036055 -----------------CCCGUUAUC--CCCUUUUCCACCACAUGUGGCCCGCUUUUCGACCCUUUGAGCCAUGUGCGGUAUUGCAGCUGUCAAAGCAGCCGGCAUGCGGAAAA -----------------.........--....((((((((.((((((((.......((((....)))))))))))).)))..(((.(((((....)))))..)))...))))). ( -28.71, z-score = -1.28, R) >droSec1.super_14 1687185 104 + 2068291 --------CCCGUUAUCCCCUUUUUC--CCCUAUUCCACCACAUGUGGCCAGCUUUUCGACCCUAUGAGCCAUGUGCGGUAUUGCAGCUGUCAAAGCAGCCGGCAUGCGGAAAA --------.((((.............--.........(((.((((((((((..............)).)))))))).)))..(((.(((((....)))))..))).)))).... ( -29.34, z-score = -1.56, R) >droYak2.chr2L 1724266 105 + 22324452 ------UCCCCCCUUUGCCCCUUUUUCACCAUAU---GCCACAUGUGGCCCGCUUUUCGACCCUUUGAGCCAUGUGUGGUAUUGCAGCUGUCAAAGCAGCCGGCAUGCGGAAAA ------....((...((((..........((.((---((((((((((((.......((((....))))))))))))))))))))..(((((....))))).))))...)).... ( -33.81, z-score = -2.47, R) >droEre2.scaffold_4929 1797135 102 + 26641161 ---------CCACUUUGCCCCUUUUUCCCCAUGU---GCCACUUGUGGACCGCUUUUCGACCCUUUGAGCCAUGUGUGGUAUUGCAGCUGUCAAAGCAGCCGGCAUGCGGAAAA ---------.............((((((.(((((---(((((.(((((.......(((((....)))))))))).)))))....(.(((((....))))).)))))).)))))) ( -28.31, z-score = -0.48, R) >droAna3.scaffold_12916 348268 97 - 16180835 -------------UUAACCGCCAUUCCAUUCCGUUUCGUUUCGCACAAUCC----UUCCACCCUAUGAGCCAUGUGUGUUAUUGCAGCUGUCAAAGCACCCGGCAUGCGGAAAA -------------....((((.((.((.....((...((..((((((...(----((.........)))...))))))..)).)).(((.....)))....)).)))))).... ( -19.70, z-score = -0.52, R) >consensus _________CC__UUUCCCCCUUUUCCACCAUAUUCCACCACAUGUGGCCCGCUUUUCGACCCUUUGAGCCAUGUGCGGUAUUGCAGCUGUCAAAGCAGCCGGCAUGCGGAAAA .................((..................(((.((((((((...................)))))))).)))..(((.(((((....)))))..)))...)).... (-18.50 = -18.78 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:09:01 2011