| Sequence ID | dm3.chr2L |
|---|---|
| Location | 143,193 – 143,290 |
| Length | 97 |
| Max. P | 0.887984 |
| Location | 143,193 – 143,290 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.76 |
| Shannon entropy | 0.38654 |
| G+C content | 0.41757 |
| Mean single sequence MFE | -30.80 |
| Consensus MFE | -20.48 |
| Energy contribution | -20.85 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.887984 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 143193 97 + 23011544 GAAACUCCCCACUAGGAACUAGUUCUUAA-----------------------UAACCGAAGAUUUUAAAGACUAUAAACUCCCCACUAGGAUCUAGUUCUUAGGUAGUUCGCGCUAGUAA ...........(((((((((((.((((..-----------------------......)))).................(((......))).))))))))))).((((....)))).... ( -18.10, z-score = -0.11, R) >droSim1.chr2L 145680 111 + 22036055 GAAACUCCCCACUAGGAACUAGUUCUUAGGAACUAG---------GUCUUAUUAACGGAAGGGUUUAAAGGCUCUAAACUCCCCACUAGGAUCUAGUUCUUAGGUAGUUCGCACUAGUAA ..........(((((((((((...((((((((((((---------((((((.....(((((((((....))))))....)))....))))))))))))))))))))))))...))))).. ( -38.40, z-score = -2.73, R) >droSec1.super_14 141961 111 + 2068291 GAAACUCCCCACUAGGAACUAGUUCUUAGGAACUAG---------GUCUUAUUAACGGAAGAGUUUAAAGGCUCUAAACUCCCCACUAGGAUCUAGUUCUUAGGUAGUUCGCACUAGUAA ..........(((((((((((...((((((((((((---------((((((.....(((((((((....))))))....)))....))))))))))))))))))))))))...))))).. ( -39.30, z-score = -3.36, R) >droYak2.chr2L 132402 118 + 22324452 GGAACUCCCCACUGUGAACUAGUUCUUUGCAGCUCACAUUUAUUCACCUCAUUAACGGAAGAGUUCAAAGAAUCGGAACUCCCCACUAGAAAAUGGUUCAUGGGCAGCUCGCAUUUAU-- .((.((.((((...(((((((((((((((.(((((.........................))))))))))))).((......)).........))))))))))).)).))........-- ( -27.41, z-score = -0.92, R) >consensus GAAACUCCCCACUAGGAACUAGUUCUUAGGAACUAG_________GUCUUAUUAACGGAAGAGUUUAAAGACUCUAAACUCCCCACUAGGAUCUAGUUCUUAGGUAGUUCGCACUAGUAA ...........(((((((((((.((((((.................((........))..(((((((.......)))))))....)))))).)))))))))))................. (-20.48 = -20.85 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:10 2011