| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,724,234 – 17,724,336 |
| Length | 102 |
| Max. P | 0.619052 |
| Location | 17,724,234 – 17,724,336 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 71.46 |
| Shannon entropy | 0.52574 |
| G+C content | 0.53193 |
| Mean single sequence MFE | -26.52 |
| Consensus MFE | -12.06 |
| Energy contribution | -12.47 |
| Covariance contribution | 0.41 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.619052 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17724234 102 + 23011544 ---------CCUCGGUGGUGCCAUCUUCAAGUGGGUGCCAGCUUGAAUCUUCCAAGUUCCAUCCACUUCUAACCGCC-----ACCCCAAGAUACCACCACAUUUUCCAUUGCGGAA ---------....(((((((........(((((((((..((((((.......)))))).))))))))).....))))-----)))...........((.((........)).)).. ( -29.92, z-score = -2.93, R) >droPer1.super_8 2062787 104 - 3966273 CCAGGCAAUCGUCUGUGGUGCCAUCUUCAAGUGGGUGCCAGCUUGAAGUUUUUUC------UCAAGUUCUUCCCCCC-----GCCCCGCC-CACACUCCCUUCGUCUUGGACGGAA ...((((.(((....)))))))........(((((((...((..((((..(((..------..)))..)))).....-----))..))))-)))......((((((...)))))). ( -26.00, z-score = 0.03, R) >droAna3.scaffold_12916 13017564 96 - 16180835 ---------CGUCUGUGGUGGCAUCUUCGAGUGGGUGCCAGCUUGAACUUUUCCAG---------CUCCUCGCCCACAAAGCACCCCAU--UUUCCCCAUUUUUUUUAAAGCGGAA ---------.....((((.((...(((...(((((((..((((.((.....)).))---------))...))))))).)))..))))))--.((((...(((.....)))..)))) ( -23.50, z-score = -0.26, R) >droEre2.scaffold_4845 16056341 98 - 22589142 ---------CCUCGGUGGUGCCAUCUUCAAGUGGGUGCCAGCUUGAAUCUUCCAAGUU----CCCCUCUUAGCCAAC-----ACCCCAAGACACCACCACAUUUUCCAAUGCGGAA ---------....(((((((...((((...(.(((((...(((.((............----....))..)))...)-----)))))))))))))))).....((((.....)))) ( -25.19, z-score = -1.13, R) >droYak2.chr2R 17764318 83 - 21139217 ---------CCCCGGUGGUGCCAUCUUCAAGUGGGUGCCAGCUUGAAUCUU-------------------AACCAAC-----ACCCCAAGACACCACCACAUUUUCCAUUGCGGAA ---------....(((((((.....(((((((.(....).)))))))((((-------------------.......-----.....))))))))))).....((((.....)))) ( -22.30, z-score = -1.00, R) >droSec1.super_7 1360281 107 + 3727775 ---------CCUCGGUGGUGCCAUCUUCAAGUGGGUGCCAGCUUGAAUCUUCCAAGUUCCAUCCACUCCUAACCACCUAGCCACCCUAAGACACCACCACAUUUUCCACUGCGGAA ---------....(((((((.(.......((((((((..((((((.......)))))).)))))))).(((......))).........).))))))).....((((.....)))) ( -30.60, z-score = -3.01, R) >droSim1.chr2L 17404396 107 + 22036055 ---------CCUCGGUGGUGCCAUCUUCAAGUGGGUGCCAGCUUGAAUCUUCCAAGUUCCAUCCACUCCUAACCACCUAGCCACCCCAAGACAACACCACAUUUUCCACUGCGGAA ---------.....((((((...((((..((((((((..((((((.......)))))).)))))))).(((......))).......))))...))))))...((((.....)))) ( -28.10, z-score = -2.10, R) >consensus _________CCUCGGUGGUGCCAUCUUCAAGUGGGUGCCAGCUUGAAUCUUCCAAGUU___UCCACUCCUAACCACC_____ACCCCAAGACACCACCACAUUUUCCAAUGCGGAA .............(((((((.....(((((((.(....).)))))))....................................(.....).)))))))......(((.....))). (-12.06 = -12.47 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:40 2011