| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,724,111 – 17,724,227 |
| Length | 116 |
| Max. P | 0.982964 |
| Location | 17,724,111 – 17,724,227 |
|---|---|
| Length | 116 |
| Sequences | 7 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 76.20 |
| Shannon entropy | 0.44570 |
| G+C content | 0.52470 |
| Mean single sequence MFE | -30.43 |
| Consensus MFE | -14.92 |
| Energy contribution | -15.61 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.12 |
| SVM RNA-class probability | 0.982964 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17724111 116 - 23011544 ACAUCCCCUGAAAAUCGUCUGAGCUGUGUUGAGCAGCUGCCUUUUGUGUCUCUUUCCCUUUGGCUUGAGCUCCACGAGCUAACCAUUUUUCGCUCAGUGCAGCUUCUCUCACUUUG ....................((((((..((((((....(((....................)))...(((((...)))))...........))))))..))))))........... ( -29.85, z-score = -1.59, R) >dp4.chr4_group3 1002937 99 + 11692001 CCAUCCCUUAAAA--CGUCUGAGCUGUGAUGAGC----------CCUGCCUUCUCUCGUUUUUCUUUGUAUCC---GACUCGUGCUUUU--GCUCACUGCAGCAUCUCUCGUUUUG ........(((((--((...(((((((..(((((----------...((......(((..(........)..)---)).....))....--)))))..))))).))...))))))) ( -25.00, z-score = -4.09, R) >droPer1.super_8 2062648 99 + 3966273 CCAUCCCUUAAAA--CGUCUGAGCUGUGAUGAGC----------CCUGCCUUCUCUCGUUUUUCUUCGUAUCC---GACUCGUGCUUUU--GCUCACUGCAGCAUCUCUCGUUUUG ........(((((--((...(((((((..(((((----------...((......(((..(........)..)---)).....))....--)))))..))))).))...))))))) ( -25.00, z-score = -3.98, R) >droEre2.scaffold_4845 16056221 113 + 22589142 ACAUCCCCUGAAAAUCGUCUGAGCUGUGAUGAGCUGC---CUUGUGUGUCCCUUUUCGCUUGGCUCGGGCUCCCCAAGCUCCACAUUUUUCGCUCAGUGCAGCUUCUCUCACUUCG .........(((........(((((((..(((((.((---(..(((..........)))..)))..(((((.....))).)).........)))))..))))))).......))). ( -30.86, z-score = -1.67, R) >droYak2.chr2R 17764198 113 + 21139217 ACAUCCCCUGAAAAUCGUCUGAGCUGUGCUGAGCUGC---CUUGCGCAUCCCUUUCCGCUUAGCUUGGGCUUCCCAGGCUCCCCGUUUUUCGCUCAGUGCAGCUUCUCUCACUUUG ....................((((((..(((((((((---.....)))........((...((((((((...))))))))...))......))))))..))))))........... ( -37.50, z-score = -3.51, R) >droSec1.super_7 1360159 115 - 3727775 ACAUCCCCUGAAAAUCGUCUGAGCUGUGAUGAGCAGCU-GCCUUUGUGCCCCUUUCCCCUUGGCUUGGGCUCCUCGAGCUCCUCGUUUUUCGCUCAGUGCAGCUUCUCUCACUUUG .........................((((.(((.((((-((((....((((....((....))...)))).....((((............)))))).)))))).))))))).... ( -31.20, z-score = -1.30, R) >droSim1.chr2L 17404274 115 - 22036055 ACAUCCCCUGAAAAUCGUCUGAGCUGUGAUGAGCAGCU-GCCUUUGUGCCCCUUUCCCCUUGGCUUGGGCUCCCCGAGCUCCCCAUUUUUCGCUCAGUGCAGCUUCUCUCACUUUG .........................((((.(((.((((-((..(((.((............((((((((...))))))))...........)).))).)))))).))))))).... ( -33.60, z-score = -2.60, R) >consensus ACAUCCCCUGAAAAUCGUCUGAGCUGUGAUGAGCAGC___CUUUUGUGCCCCUUUCCGCUUGGCUUGGGCUCCCCGAGCUCCCCAUUUUUCGCUCAGUGCAGCUUCUCUCACUUUG ................(...(((((((..(((((.((........))....................((((.....))))...........)))))..))))).))...)...... (-14.92 = -15.61 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:39 2011