| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,714,399 – 17,714,499 |
| Length | 100 |
| Max. P | 0.628050 |
| Location | 17,714,399 – 17,714,499 |
|---|---|
| Length | 100 |
| Sequences | 14 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 88.67 |
| Shannon entropy | 0.25738 |
| G+C content | 0.55000 |
| Mean single sequence MFE | -35.90 |
| Consensus MFE | -20.35 |
| Energy contribution | -20.77 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.628050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17714399 100 - 23011544 CAGCGCGAGACAUACAAGUUAGAGGCCAUGGCCCAAGACAAGGGCUAUCCGCCAUUAUCGCGUACUGUCGAAGUACAAAUCGAUGUGGUCGAUCGUGCAA ..(((((((((.((((.......(((.(((((((.......)))))))..)))........(((((.....))))).......)))))))..)))))).. ( -35.60, z-score = -2.91, R) >droSec1.super_7 1350578 100 - 3727775 CAGCGCGAGACAUACAAGUUAGAGGCCAUGGCCCAAGACAAGGGCUAUCCGCCAUUAUCGCGUACUGUCGAAGUACAAAUCGAUGUGGUCGAUCGUGCAA ..(((((((((.((((.......(((.(((((((.......)))))))..)))........(((((.....))))).......)))))))..)))))).. ( -35.60, z-score = -2.91, R) >droYak2.chr2R 17754563 100 + 21139217 CAGCGCGAGACAUACAAGUUAGAGGCCAUGGCCCAAGACAAGGGCUAUCCGCCAUUAUCGCGUACUGUCGAAGUACAAAUCGAUGUGGUCGAUCGUGCAA ..(((((((((.((((.......(((.(((((((.......)))))))..)))........(((((.....))))).......)))))))..)))))).. ( -35.60, z-score = -2.91, R) >droEre2.scaffold_4845 16046770 100 + 22589142 CAGCGCGAGACAUACAAGUUAGAGGCCAUGGCCCAAGACAAGGGCUAUCCGCCAUUAUCGCGUACUGUCGAAGUACAAAUCGAUGUGGUCGAUCGUGCAA ..(((((((((.((((.......(((.(((((((.......)))))))..)))........(((((.....))))).......)))))))..)))))).. ( -35.60, z-score = -2.91, R) >droAna3.scaffold_12916 13008661 100 + 16180835 CAGCGCGAGACAUACAAGUUAGAGGCCAUGGCCCAAGACAAGGGCUAUCCGCCACUAUCGCGUACUGUCGAAGUACAGAUCGAUGUGGUCGAUCGGGCCA ..(((((((((......)))((.(((.(((((((.......)))))))..))).)).))))(((((.....))))).(((((((...)))))))..)).. ( -36.10, z-score = -2.15, R) >dp4.chr4_group3 993649 100 + 11692001 CAGCGCGAGACAUACAAGUUAGAGGCCAUGGCCCAAGACAAGGGCUAUCCGCCACUAUCGCGUACUGUCGAAGUACAGAUCGAUGUGGUCGAUCGGGCCA ..(((((((((......)))((.(((.(((((((.......)))))))..))).)).))))(((((.....))))).(((((((...)))))))..)).. ( -36.10, z-score = -2.15, R) >droPer1.super_8 2053364 100 + 3966273 CAGCGCGAGACAUACAAGUUAGAGGCCAUGGCCCAAGACAAGGGCUAUCCGCCACUAUCGCGUACUGUCGAAGUACAGAUCGAUGUGGUCGAUCGGGCCA ..(((((((((......)))((.(((.(((((((.......)))))))..))).)).))))(((((.....))))).(((((((...)))))))..)).. ( -36.10, z-score = -2.15, R) >droWil1.scaffold_180764 3192251 100 + 3949147 CAGCGCGAGACAUACAAAUUAGAGGCAAUGGCCCAAGACAAAGGCUAUCCGCCAUUAUCUCGUACUGUCGAGGUACAAAUCGACGUGGUCGAUCGGGCAA ..((.((((((.(((......(((..((((((((........))......))))))..))).....(((((........)))))))))))..))).)).. ( -31.20, z-score = -2.10, R) >droVir3.scaffold_12963 16693278 100 - 20206255 CAGCGCGAGACAUACAAAUUAGAGGCGAUGGCCCAAGACAAGGGCUAUCCGCCAUUAUCGCGUACGGUCGAAGUACAGAUCGAUGUGGUCGAUCGUGCCA ..(((((((((............(((((((((((.......))))))).)))).....(((((.(((((........)))))))))))))..)))))).. ( -41.90, z-score = -4.34, R) >droMoj3.scaffold_6500 21647846 100 - 32352404 CAGCGCGAGACAUACAAAUUAGAGGCGAUGGCCCAAGACAAGGGCUAUCCGCCAUUAUCGCGCACGGUCGAAGUGCAGAUCGAUGUGGUCGAUCGUGCCA ....((((......(......).(((((((((((.......))))))).))))....))))((((((((((..((((......)))).)))))))))).. ( -42.30, z-score = -3.78, R) >droGri2.scaffold_14628 36196 100 - 76064 CAGCGCGAGACAUACAAAUUAGAGGCGAUGGCCCAAGACAAGGGCUAUCCGCCAUUAUCGCGAACGGUCGAAGUACAGAUCGAUGUGGUCGAUCGGGCCA ...(((((......(......).(((((((((((.......))))))).))))....)))))..(((((((..((((......)))).)))))))..... ( -38.00, z-score = -3.16, R) >anoGam1.chr3R 10972562 100 + 53272125 UAGCGCGAAACGUACAAACUCGAAGCGAUGGCACAAGACAAAGGAUAUCCCCCACUGUCGCGUACGGUCGAGGUGCAGAUCGAUGUCGUCGAUCGGGCCA .....(((..(((((.........((....))....((((..((.......))..))))..))))).))).(((.(.(((((((...)))))))).))). ( -29.20, z-score = 0.29, R) >apiMel3.Group16 5403643 100 + 5631066 UAGCGUGAGAUGUACAAGCUGGAGGCGAUGGCCCAAGACAAGGGCUUCCCGCCCUUGUCGCGAACGGUGGAAGUACAGAUUGACGUUGUGGACCGUGCGA ((((((.((.(((((..(((((.(((....))))..(((((((((.....))))))))).....))))....)))))..)).))))))............ ( -37.00, z-score = -1.70, R) >triCas2.ChLG5 14971719 100 - 18847211 CAGCGCGAGACGUACAAGCUGGAGGCCACCGCCCAAGACAAAGGCUACCCUCCCCUCUCCCGAUCCGUGGAGGUCCAGAUAGACGUGGUGGAUCGCGCGA ..((((((.((((.....(((((((((...............))))..((((((.((....))...).))))))))))....))))......)))))).. ( -32.26, z-score = 0.32, R) >consensus CAGCGCGAGACAUACAAGUUAGAGGCCAUGGCCCAAGACAAGGGCUAUCCGCCAUUAUCGCGUACUGUCGAAGUACAGAUCGAUGUGGUCGAUCGUGCCA ..((.(((...........(((.(((..(((((.........)))))...))).)))(((..(((.(((((........))))))))..)))))).)).. (-20.35 = -20.77 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:38 2011