| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,682,409 – 17,682,563 |
| Length | 154 |
| Max. P | 0.752826 |
| Location | 17,682,409 – 17,682,563 |
|---|---|
| Length | 154 |
| Sequences | 5 |
| Columns | 154 |
| Reading direction | forward |
| Mean pairwise identity | 85.32 |
| Shannon entropy | 0.26358 |
| G+C content | 0.37030 |
| Mean single sequence MFE | -38.56 |
| Consensus MFE | -25.32 |
| Energy contribution | -26.64 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.752826 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17682409 154 + 23011544 UGCGACGGCAAUAAGUGCACUGCAAGAAAUUAGUGGCUCGUGAAAAUAUUUAAAACCCGGAACAUAUUUAUUUUUCAUUGCUAUUGCCGAUGGGUUUCUACCAUUUAUUGCCAAUUGAAUAAGUAUUUCUUGUUGUGUAUUUGUCCUCCCCGUU ...(((((..((((((((((.((((((((((((((((..(((((((.........................))))))).)))))))..(((((.......)))))...................))))))))).)))))))))).....))))) ( -38.31, z-score = -1.94, R) >droEre2.scaffold_4845 16019913 153 - 22589142 UGCGAUGGCGAUAAGUGCACUGCAAGAAAUUAGUUGCCCGUGAAAAUCUUUCAAGCCAGGCACGUAUUUAUUUUGCAUCGCU-UUGGCGAUAGUUUUUUGCCAUUUAUUACCGAUUAAGUAAGUAUUUCUUGUUGUGCAUUUGUCCUCCCUUUU .((....))(((((((((((.(((((((....((.(((..((((.....)))).....)))))((((((((((...((((..-.((((((.......))))))........)))).))))))))))))))))).)))))))))))......... ( -45.10, z-score = -3.47, R) >droYak2.chr2R 17726986 152 - 21139217 UGCGACGCCCAUGAGUGCACUGCAAGAAAGUAGUUGUUCGUGAAAAUAUUUAAGACCAGCGCCAGUUUUAUUUUGCAUUGUUUUUGGCGACAACUUUUUAGCA--UAUUAGCGAUUAAAAAAGUAUUUCUUGUUGUGCAUGUUUUCCUCCUUUU ..............((((((.((((((((((.((((.((.((((....)))).)).))))(((((...((........))...))))).)).(((((((.((.--.....)).....))))))).)))))))).)))))).............. ( -33.90, z-score = -0.54, R) >droSec1.super_7 1323418 154 + 3727775 UGCGACGGCCAUAAGUGCACUGCAAGAAAUUAAUGGCUCGUGAAAAUAUUUAAAACCCGGUACAUAUUUAUUUUUCAUUGCUUUUGACGAUGGCUUUCUACCAUUUAUUACCGAUUAAAUAAGUAUUUCUUGUUGUGCAUUUGUCCUUCCCGUU ...(((((..((((((((((.((((((((((((.(((..(((((((.........................))))))).))).)))).(((((.......)))))....................)))))))).)))))))))).....))))) ( -36.11, z-score = -2.26, R) >droSim1.chr2L 17366999 154 + 22036055 UGCGACGGCAAUAAGUGCACUGCAAGAAAUUAGUGGCUCGUGAAAAUAUUUAAAACCCGGUACAUAUUUAUUUUUCAUUGCUUUUGGCGAUGGCUUUCUACCAUUUAUUACCGAUUAAAUAAGUAUUUCUUGUUGUGCAUUUGUCCUUCCCGUU ...(((((..((((((((((.((((((((((((.(((....(((((((..((............))..)))))))((((((.....)))))))))..)))..(((((((........)))))))))))))))).)))))))))).....))))) ( -39.40, z-score = -2.34, R) >consensus UGCGACGGCAAUAAGUGCACUGCAAGAAAUUAGUGGCUCGUGAAAAUAUUUAAAACCCGGUACAUAUUUAUUUUUCAUUGCUUUUGGCGAUGGCUUUCUACCAUUUAUUACCGAUUAAAUAAGUAUUUCUUGUUGUGCAUUUGUCCUUCCCGUU ...(((((..((((((((((.((((((((....(((....((((....))))....))).....(((((((((...((((........(((((.......)))))......)))).))))))))))))))))).)))))))))).....))))) (-25.32 = -26.64 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:35 2011