| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,649,938 – 17,650,029 |
| Length | 91 |
| Max. P | 0.634340 |
| Location | 17,649,938 – 17,650,029 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 75.91 |
| Shannon entropy | 0.46456 |
| G+C content | 0.41265 |
| Mean single sequence MFE | -18.72 |
| Consensus MFE | -8.46 |
| Energy contribution | -9.72 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.634340 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 17649938 91 + 23011544 UUCGUUCAUAACUUGCCCCGCAAAAAAUGCUGGAAAAAGUGCGACCGUAACCGUUUUC-GGUUUACCGGUUGCCCUAACAACUAAAUCUCAU ...(((....((((..((.(((.....))).))...))))(((((((.(((((....)-))))...)))))))...)))............. ( -24.00, z-score = -3.09, R) >droVir3.scaffold_12963 16609320 84 + 20206255 ----UCUUAAAAAUGUUGCGAAAAAAUUGUCACGCAAAUUUGAAUUUCGUUUUUAUUU---UUUUUUGCGUUCUCUUCACACUAAAU-UAAU ----.............(((((((((.....(((.((((....))))))).......)---))))))))..................-.... ( -8.70, z-score = 0.29, R) >droEre2.scaffold_4845 15987875 91 - 22589142 UUCGUUCAUAACUUGCCCCGCAAAAAAUGCUGGAAAAAGUGCAACCGCUGCCGUUUUC-GGCCCACCGGUUGCCCUAAUAACUAAAUCUCAU ..........((((..((.(((.....))).))...))))(((((((..((((....)-)))....)))))))................... ( -24.00, z-score = -3.06, R) >droYak2.chr2R 17691928 91 - 21139217 UUCGUUCAUAACUUGCCCCGCAAAAAAUGCUGGAAAAAGUGCAACCGUAACCGUUUUG-GGUUAAUCGGUUGCCCUAAAACCUAAAUCUCAU ..........((((..((.(((.....))).))...))))((((((((((((......-)))))..)))))))................... ( -22.60, z-score = -2.69, R) >droSec1.super_7 1290937 91 + 3727775 UUCGUUCAUAACUUGCCCCGCAAAAAAUGCUGGAAAAAGUGCCACCGUAACCGUUUUUCGGCCUACCG-UUGCCCUAACAACUAAAUCUCAU ...(((....((((..((.(((.....))).))...))))((.((.(((.(((.....)))..))).)-).))...)))............. ( -14.70, z-score = -0.81, R) >droSim1.chr2L 17337986 92 + 22036055 UUCGUUCAUAACUUGCCCCGCAAAAAAUGCUGGAAAAAGUGCCACCGUAACCGUUUUCCGGCUUAUCGGUUGCCCUAACAACUAAAUCUCAU ...(((....((((..((.(((.....))).))...))))((.((((((((((.....))).))).)))).))...)))............. ( -18.30, z-score = -1.49, R) >consensus UUCGUUCAUAACUUGCCCCGCAAAAAAUGCUGGAAAAAGUGCAACCGUAACCGUUUUC_GGCUUACCGGUUGCCCUAACAACUAAAUCUCAU ..........((((..((.(((.....))).))...))))(((((((...((.......)).....)))))))................... ( -8.46 = -9.72 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:33 2011