| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,642,971 – 17,643,083 |
| Length | 112 |
| Max. P | 0.925850 |
| Location | 17,642,971 – 17,643,083 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 78.10 |
| Shannon entropy | 0.43268 |
| G+C content | 0.38627 |
| Mean single sequence MFE | -27.61 |
| Consensus MFE | -16.41 |
| Energy contribution | -17.20 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.925850 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17642971 112 - 23011544 CAAAAUCAGAUUUUAAUGGAUUUCCAUAGUCCCUGUUGCGACGGGAAAUUGCCUUGAAUUCCUGUCAAUAUCGGAAUCCAUUAAGAGGUUCUGCGAAACAAAUAAUAGCAAU ......((((((((((((((((((.(((((.......))((((((((.((.....)).))))))))..))).))))))))))))))...))))................... ( -28.80, z-score = -2.25, R) >droSim1.chr2L_random 681755 112 - 909653 CGAAAUCAGAUUUUAAUGGAUUUCCAAAGUCCCAGUUGCGACGGGAAAUUGCCUUGAAUUCCUGUCAAUAUCGGAAUCCAUUAAGAUGUUCUGCGAAACAAAUAAUAGCAAU .........(((((((((((((((....((.......))((((((((.((.....)).))))))))......)))))))))))))))....(((.............))).. ( -28.12, z-score = -2.20, R) >droSec1.super_7 1284075 112 - 3727775 CGAAAUCAGAUUUUAAUGGAUUUCCAUAGUCCCAGUUGCGACGGGAAAUUGCCUUGAAUUCCUGUCAAUAUCGGAAUCCAUUAAGAUGUUCUGCGAAACAAAUAAUAGCAAU .........(((((((((((((((.(((((.......))((((((((.((.....)).))))))))..))).)))))))))))))))....(((.............))).. ( -28.92, z-score = -2.39, R) >droYak2.chr2R 17684951 112 + 21139217 CGAAAUCAGAUUUUAAUGGAUUUGCAUUGACGCAGUUGCGACGGGAAAUUGCCUUGAAUUCCUGUCAAUAUCGGAAUCCAUUAGGAUGUUCUGCAAAACAAAUAAUAGUAAU ......((((((((((((((((((((..........)))((((((((.((.....)).)))))))).......)))))))))))))...))))................... ( -28.90, z-score = -2.08, R) >droEre2.scaffold_4845 15980924 112 + 22589142 CGAAAUCAGAUUUUAAUGGAUUUGCAGAGUCCCAGUUGCGAGGGGAAAUUGCCUUGAACUCCCGUCAAUAUCGGAAUCCAUUAAGAUGUCCUGCGAAACAGAUAAUAGUAAU .........((((((((((((((((((........))))((.((((..((.....))..)))).)).......))))))))))))))...(((.....)))........... ( -26.70, z-score = -1.02, R) >droAna3.scaffold_12916 12942138 101 + 16180835 --CCAGCUUGCUGAAAUUGAUGGAAUAUGCUUGAGUGAGGCUAGGAAAGUGCCUUAACGCUUAAUCAAUACCGAAACCAAUUAAGAAAGUCAGCGAAGAGCAU--------- --...(((((((((..(((((((.......(((((((((((.........))))...)))))))((......))..)).))))).....)))))...))))..--------- ( -24.20, z-score = -1.53, R) >consensus CGAAAUCAGAUUUUAAUGGAUUUCCAUAGUCCCAGUUGCGACGGGAAAUUGCCUUGAAUUCCUGUCAAUAUCGGAAUCCAUUAAGAUGUUCUGCGAAACAAAUAAUAGCAAU ......((((((((((((((((.........((.((...((((((((.((.....)).))))))))...)).))))))))))))))...))))................... (-16.41 = -17.20 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:32 2011