| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,642,797 – 17,642,888 |
| Length | 91 |
| Max. P | 0.804822 |
| Location | 17,642,797 – 17,642,888 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 87.98 |
| Shannon entropy | 0.20946 |
| G+C content | 0.41289 |
| Mean single sequence MFE | -25.47 |
| Consensus MFE | -16.79 |
| Energy contribution | -16.89 |
| Covariance contribution | 0.10 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.804822 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17642797 91 + 23011544 --------------------GGGGGAAAAUCUCUUCCGCAAAUGGAAAGCAAUCAGAAAAUGUUACCGUUGUCUGAGCACAUACA------UUUAAAUUACUCGAAAGGGUUGAGCG --------------------((((((.....))))))(((((((....((..(((((.((((....)))).))))))).....))------))).....((((....))))...)). ( -24.50, z-score = -2.43, R) >droSim1.chr2L_random 681583 91 + 909653 --------------------GGGGGAAAAUCUCUUCCGCAAAUGGAAAGCAAUCAGAAAAUGUUACCGUUGUCUGAGCACAUACA------UUUAAAUUACUCGAAAGAGUUGAGCG --------------------((((((.....))))))(((((((....((..(((((.((((....)))).))))))).....))------))).....((((....))))...)). ( -25.40, z-score = -2.92, R) >droSec1.super_7 1283903 91 + 3727775 --------------------GGGGGAAAAUCUCUUCCGCAAAUGGAAAGCAAUCAGAAAAUGUUACCGUUGUCUGAGCACAUACA------UUUAAAUUACUCGAAAGAGUUGAGCG --------------------((((((.....))))))(((((((....((..(((((.((((....)))).))))))).....))------))).....((((....))))...)). ( -25.40, z-score = -2.92, R) >droYak2.chr2R 17684780 91 - 21139217 --------------------GAGGGAAAAUCUCUUCCGCAAAUGGAAAGCAAUCAGAAAAUGUUACCGUUGUCUGAGCACAUACA------UUUAAAUUACUCGAAAGAGUUGAGCG --------------------(((((.....))))).((((((((....((..(((((.((((....)))).))))))).....))------))).....((((....))))...))) ( -22.80, z-score = -2.28, R) >droEre2.scaffold_4845 15980752 91 - 22589142 --------------------AGGGGAAAAUCUCUUCCGCAAAUGGAAAGCAAUCAGAAAAUGUUACCGUCGUCUGAGCACAUACA------UUUAAAUUACUCGAAAGAGUUGAGCG --------------------...((((......))))(((((((....((..(((((..(((....)))..))))))).....))------))).....((((....))))...)). ( -22.10, z-score = -1.89, R) >droAna3.scaffold_12916 12941925 111 - 16180835 GGAAGUGGAGAGUGGAAAGUGGGGGAAAAUCUCUUCCGCAAAUGGAAAGCAAUCAGAAAAUGUUACCGUUGUAUGUACACAUACA------UUUAAAUUACUCGAAAGAGUUGAGCG ..(((((....(((....((((((((.....)))))))).(((((..((((.........)))).))))).......)))...))------))).....((((....))))...... ( -25.50, z-score = -1.39, R) >droPer1.super_8 1979177 95 - 3966273 --------------------GGGGGGAAAUCUCUUCCGCAAAUGGAAAGCAAUCAGAAAAUGCUACCGUUGUGUGUGCGCACACACACA--UUUAAAUUACUCGAAAGAGUUGAGCA --------------------.((((((....))))))((.(((((..((((.........)))).)))))(((((((....))))))).--........((((....))))...)). ( -30.70, z-score = -3.21, R) >dp4.chr4_group3 918893 97 - 11692001 --------------------GGGGAAAAAUCUCUUCCGCAAAUGGAAAGCAAUCAGAAAAUGCUACCGUUGUGUGUGCGCACACACACACAUUUAAAUUACUCGAAAGAGUUGAGCA --------------------..((((.......))))((.(((((..((((.........)))).)))))(((((((......))))))).........((((....))))...)). ( -27.40, z-score = -2.51, R) >consensus ____________________GGGGGAAAAUCUCUUCCGCAAAUGGAAAGCAAUCAGAAAAUGUUACCGUUGUCUGAGCACAUACA______UUUAAAUUACUCGAAAGAGUUGAGCG ....................((((((.....))))))((.(((((..((((.........)))).))))).............................((((....))))...)). (-16.79 = -16.89 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:31 2011