| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,626,670 – 17,626,778 |
| Length | 108 |
| Max. P | 0.500000 |
| Location | 17,626,670 – 17,626,778 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 131 |
| Reading direction | forward |
| Mean pairwise identity | 56.01 |
| Shannon entropy | 0.69168 |
| G+C content | 0.31931 |
| Mean single sequence MFE | -27.75 |
| Consensus MFE | -3.86 |
| Energy contribution | -4.54 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.58 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.14 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2L 17626670 108 + 23011544 --------AUAUUCAUACAGAAUGACAAAAA-GUGGGCAUUCAUCUAUGUACGAGUAUCAUGCAAUUUGCGAGAAUG----UGUUUCAAGAGAAAGUGCAU----------UCUAUGGCAAAUGCAAUGUG --------((((((.(((((((((.((....-.))..))))).....)))).))))))..((((.(((((.((((((----((((((....)))).)))))----------)))...)))))))))..... ( -28.30, z-score = -1.66, R) >dp4.chr4_group3 895759 130 - 11692001 UGAUACGUAUAAUUCUA-GGAAUGAUAAUUCCGUACACAUCCUUGCACAGACAGGAUUUUCUUAGAGUAAAAUAUUAGAAAUAUUCUAAAAAAACGCGUUUUUCGUCCGAUAUUAUAUCGGAUAUUAUAUU .((.((((...((((((-(((((....)))))......(((((.(......)))))).....))))))......(((((.....)))))......))))...))((((((((...))))))))........ ( -27.40, z-score = -2.20, R) >droSec1.super_7 1267571 112 + 3727775 --------AUAUUCUUAUAGAAUGACAAAAA-GUGGGCAUUCAUUCAUGU------AUAAUAAAAAUUUGGAGACUG----UGCUUAAAAAGAAAGUGCAUCCACUUUGAUUCUAUGGGAAAUGCAUAGUG --------...((((((((((((.....(((-((((((((......))))------.............(....)((----..(((.......)))..)).))))))).)))))))))))).......... ( -26.80, z-score = -2.40, R) >droSim1.chr2L 17318832 106 + 22036055 --------AUAUUCUUAUAGAAAGACAAAAA-GUGG------AUUCAUAU------AUAAUGAAAAUUGGGAGACUG----UGCUUAAAAAGAAAGUGCAUCCACUUUGAUUCUAUGGGAAAUGCAUAGUG --------...(((((((((((......(((-((((------((((((..------...)))))....((....))(----..(((.......)))..).))))))))..))))))))))).......... ( -28.50, z-score = -3.98, R) >consensus ________AUAUUCUUAUAGAAUGACAAAAA_GUGGGCAUUCAUUCAUAU______AUAAUGAAAAUUGGGAGACUG____UGCUUAAAAAGAAAGUGCAUCCACUUUGAUUCUAUGGCAAAUGCAAAGUG ...........(((((((((((..........(((((......))))).................................(((.............)))..........))))))))))).......... ( -3.86 = -4.54 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:30 2011