| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,585,803 – 17,585,899 |
| Length | 96 |
| Max. P | 0.699115 |
| Location | 17,585,803 – 17,585,899 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 51.85 |
| Shannon entropy | 0.80982 |
| G+C content | 0.33536 |
| Mean single sequence MFE | -19.60 |
| Consensus MFE | -4.99 |
| Energy contribution | -4.95 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.699115 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17585803 96 + 23011544 ---AAGAAUCUGUGGGUAACUUGCAUCAAUAUGAACAAUUAAAGAUGAAAAUCUGAGCAAGUUACGUCUAAGGUUAGAAAAUCAUGGACUUUUAUCAAU--------- ---((((.((((((((((((((((.((.....))........((((....))))..))))))))).((((....))))...))))))).))))......--------- ( -24.20, z-score = -3.31, R) >droYak2.chr2R 17625785 85 - 21139217 --CAGGAAAUUGUG--UAACUUGUGGCAAUGCGAACAAUUAAACUUGAAAUUUAAUGCGAAUUACUUUUGGUGGUGAGACGCUAUGUAU------------------- --((((.((((((.--....((((......))))))))))...)))).........(((..(((((......)))))..))).......------------------- ( -13.30, z-score = 0.29, R) >droSec1.super_7 1227121 96 + 3727775 ---AAGAAACUUUGGGUAACUUGCAUUAAUAUGAACAAUUAAACAUGAAAAUCAAAGCAAGUUACGUCUGAGGUUGAAAAAUCAAGGACUGUUAUCUAU--------- ---.((((((.....(((((((((.(((((.......)))))...((.....))..)))))))))((((..((((....))))..)))).))).)))..--------- ( -22.80, z-score = -3.42, R) >droSim1.chr2L 17289504 105 + 22036055 ---AAGAAACUUUGGGCAACUUGCAUCAAUAUGAACAAUUAAACAUGAAAAUUAAAGCAAGUUACACCUGAGGUUGAAAAACCAAGGAUUGUUAAGACUUUUAUCUAU ---..((((.(((..(((((((((.((.....)).((........)).........)))))))...(((..((((....)))).)))...))..))).))))...... ( -18.60, z-score = -1.28, R) >droPer1.super_8 1908486 89 - 3966273 CAAAAAACAAGGCAAAUAAUUCCGAAAGUCCAGAUCUACGGAAUGGGAUCCACGGACUGGAUGAAUAUCAAUCCAAUAUGGGUAUCCAU------------------- ....................((((...((((...((....))...))))...)))).(((((........)))))..((((....))))------------------- ( -19.10, z-score = -0.53, R) >consensus ___AAGAAACUGUGGGUAACUUGCAUCAAUAUGAACAAUUAAACAUGAAAAUCAAAGCAAGUUACGUCUGAGGUUGAAAAACCAUGGAUU_UUA____U_________ ...............(((((((((................................)))))))))........................................... ( -4.99 = -4.95 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:20 2011