| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,569,093 – 17,569,187 |
| Length | 94 |
| Max. P | 0.584177 |
| Location | 17,569,093 – 17,569,187 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 89.18 |
| Shannon entropy | 0.17864 |
| G+C content | 0.37766 |
| Mean single sequence MFE | -18.92 |
| Consensus MFE | -16.20 |
| Energy contribution | -16.89 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.584177 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17569093 94 + 23011544 GCUUAACUCUAGUUUCGUACGAAAUUUGCAGCCGUUCUCCUUUUAUCUUAAUGAACGGCUUCUGGUUGCGUCAAAUCACUUUGCGAACAAUUGC ...........(((((....)))))((((((((((((...............)))))))...(((((......)))))...)))))........ ( -19.56, z-score = -1.26, R) >droYak2.chr2R 17608604 94 - 21139217 GCUUUACUCUAUUUUUGUAAGAAGUUUAUACCCCUUCUCAUUUUAUCUUAAUGAAAGGCCUCUGGUUGCGUCAAAUCACUUUGCAAACAAUUGC .............((((((((...........((((.(((((.......)))))))))....(((((......))))).))))))))....... ( -12.40, z-score = 0.02, R) >droSec1.super_7 1209942 94 + 3727775 GCUUAACUCUAGUUUCGUACGAAAUUUGAAGUCUUUCUUCUUUUAUCCUAAUGAAAGGCUUCUGGUUGCGUCAAAUCACUUUGCGAAGAAUUGC ............(((((((........((((((((((...............))))))))))(((((......)))))...)))))))...... ( -19.86, z-score = -1.30, R) >droSim1.chr2L 17273105 94 + 22036055 GAUUAACUCUAGUUUCGUACGAAAUUUGAAGCCUUUCUCCUUUUAUCUUAAUGAAAGGCUUCUGGUUGCGUGAAAUCACUUUGCGAACAAUUGC ...........(((.((((.(.(((..((((((((((...............))))))))))..))).)(((....)))..)))))))...... ( -23.86, z-score = -3.00, R) >consensus GCUUAACUCUAGUUUCGUACGAAAUUUGAAGCCUUUCUCCUUUUAUCUUAAUGAAAGGCUUCUGGUUGCGUCAAAUCACUUUGCGAACAAUUGC .............((((((........((((((((((...............))))))))))(((((......)))))...))))))....... (-16.20 = -16.89 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:16 2011