| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,549,103 – 17,549,206 |
| Length | 103 |
| Max. P | 0.609994 |
| Location | 17,549,103 – 17,549,206 |
|---|---|
| Length | 103 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 88.40 |
| Shannon entropy | 0.24197 |
| G+C content | 0.44280 |
| Mean single sequence MFE | -28.13 |
| Consensus MFE | -22.30 |
| Energy contribution | -22.48 |
| Covariance contribution | 0.18 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.609994 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17549103 103 - 23011544 ---GAAGGGGGCAUCAUGUUGAGAGCUCAUUAAAACGAAUACGAAUUUAAUGGUACUUAAAGCGGAAAUUGCCUGGCAAGUUUCCGCCAUGGCAAGCACACA--AGCA--------- ---.......((..(((((((((.((.(((((((.((....))..))))))))).))))).(((((((((((...)).)))))))))))))))..((.....--.)).--------- ( -26.20, z-score = -0.89, R) >droSim1.chr2L 17253409 103 - 22036055 ---GAAGGGGGCAUCAUGUUGAGAGCUCAUUAAAACGAAUACGAAUUUAAUGGUACUUAAAGCGGAAAUUGCCUGGCAAGUUUCCGCCACGACGAGCACACA--AGCA--------- ---...(...((.((...(((((.((.(((((((.((....))..))))))))).))))).(((((((((((...)).)))))))))......))))...).--....--------- ( -24.50, z-score = -0.74, R) >droSec1.super_7 1190595 102 - 3727775 ---GAAGGGGGCAUCAUGUUGAGAGCUCAUUAAAA-AAAUACGAAUUUAAUGGUACUUAAAGCGGAAAUUGCCUGGCAAGUUUCCGCCACGACGAGCACACA--AGCA--------- ---...(...((.((...(((((.((.(((((((.-.........))))))))).))))).(((((((((((...)).)))))))))......))))...).--....--------- ( -23.60, z-score = -0.60, R) >droEre2.scaffold_4845 15890108 103 + 22589142 ---GAAGGGGGCAUCAUGUUGAGAGCUCAUUAAAACGAAUACGAAUUUAAUGGUACUUAAAGCGGAAAUUGCCUGGCAAGUUUCCGCCAUGGUGGGCACACA--AGCA--------- ---........((((((((((((.((.(((((((.((....))..))))))))).))))).(((((((((((...)).)))))))))))))))).((.....--.)).--------- ( -30.20, z-score = -1.85, R) >droYak2.chr2R 17590213 103 + 21139217 ---GAAGGGGGCAUCAUGUUGAGGGCUCAUUAAAACGAAUACGAAUUUAAUGGUACUUAAAGCGGAAAUUGCCUGGCAAGCUUCCGCCAUGGUGAGCACACA--AGCA--------- ---........((((((((((((..(.(((((((.((....))..))))))))..))))).((((((.((((...))))..))))))))))))).((.....--.)).--------- ( -30.40, z-score = -1.70, R) >droAna3.scaffold_12916 12856545 103 + 16180835 ---AAAAGGGGCAUCAUGUUGAGAGCUCAUUAAAAUGAAUACGAAUUUAAUGGUACUUAAAGCGGAAAUUGCCUGGCAAGUUUCCGCCAUGCCAAGCGCACA--AGCA--------- ---......(((((....(((((.((.(((((((...........))))))))).))))).(((((((((((...)).))))))))).)))))..((.....--.)).--------- ( -28.90, z-score = -1.44, R) >droPer1.super_8 1868812 98 + 3966273 -------GAAGCAUCAUGUUGAGAGCUCAUUAAAACGAAUACGAAUUUAAUGGUACUUAAAGCGGAAAUUGCCUGGCAAGUUUCCGCCGUGGUAAGCACACA--AGC---------- -------...(((((((((((((.((.(((((((.((....))..))))))))).))))).(((((((((((...)).)))))))))))))))..)).....--...---------- ( -27.00, z-score = -2.14, R) >dp4.chr4_group3 805596 98 + 11692001 -------GAAGCAUCAUGUUGAGAGCUCAUUAAAACGAAUACGAAUUUAAUGGUACUUAAAGCGGAAAUUGCCUGGCAAGUUUCCGCCAUGGCAAGCACACA--AGC---------- -------...((.((((((((((.((.(((((((.((....))..))))))))).))))).(((((((((((...)).))))))))))))))...)).....--...---------- ( -25.90, z-score = -1.86, R) >droWil1.scaffold_180764 960568 106 - 3949147 UGGUGCGGUAGCAUCAUGUUGAGAGCUCAUUAAAACGAAUUCGAAUUUAAUGGUACUUAAAGCGGAAAUUGCCUGGGAAGUUUCCGCCACGGUAAGCACAAA--AGCA--------- ((((((....))))))..(((((.((.(((((((.((....))..))))))))).))))).(((((((((.(....).)))))))))........((.....--.)).--------- ( -30.70, z-score = -1.84, R) >droMoj3.scaffold_6500 21398062 114 - 32352404 ---UCGAGCAGCAUCAUGUUGAGAGCUCAUUAAAACGAAUACGAAUUUAAUGGUACUUAAAGCGGAAAUUGCCUGGGAAGUUUCCGCCAUGCCAAGCACACUACAGCAGGCGCUGUG ---....(((((...((((((((.((.(((((((.((....))..))))))))).))))).(((((((((.(....).))))))))))))(((..((........)).)))))))). ( -34.40, z-score = -2.01, R) >droGri2.scaffold_15252 3306652 108 + 17193109 CGAUGGCAAAGCAUCAUGUUGAGAGCUCAUUAAAACGAAUACGAAUUUAAUGGUACUUAAAGCGGAAAUUGCCUGGGAAGUUUCCGCUAUGGCAAGCACACAACAGCA--------- .((((......)))).(((((.(.((((((((((.((....))..)))))))........((((((((((.(....).))))))))))......))).).)))))...--------- ( -28.90, z-score = -1.89, R) >droVir3.scaffold_12875 18905140 105 + 20611582 ---UCGGGCAGCAUCAUGUUGAGAGCUCAUUAAAACGAAUACGAAUUUAAUGGUACUUAAAGCGGAAAUUGCCUGGGAAGUUUCCGCCAUGCUAAGCACACAACAGCA--------- ---....(((((((....(((((.((.(((((((.((....))..))))))))).))))).(((((((((.(....).))))))))).)))))..))...........--------- ( -26.90, z-score = -1.18, R) >consensus ___GAAGGGAGCAUCAUGUUGAGAGCUCAUUAAAACGAAUACGAAUUUAAUGGUACUUAAAGCGGAAAUUGCCUGGCAAGUUUCCGCCAUGGCAAGCACACA__AGCA_________ ..........((......(((((.((.(((((((.((....))..))))))))).))))).(((((((((........)))))))))........)).................... (-22.30 = -22.48 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:12 2011