| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,484,187 – 17,484,285 |
| Length | 98 |
| Max. P | 0.500000 |
| Location | 17,484,187 – 17,484,285 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 70.51 |
| Shannon entropy | 0.58452 |
| G+C content | 0.42355 |
| Mean single sequence MFE | -24.26 |
| Consensus MFE | -8.56 |
| Energy contribution | -9.89 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2L 17484187 98 + 23011544 AAUCUUCUAAUUUGAGUUGCCUCCCGAGUGCUGUAAAUCUUA-CGUGG-AAUUUGCUAUGGUUUUU---UACGAAUCGUAAAAUGCCGGUGCAGCACUAUCGA .............(((....))).(((((((((((.......-.((((-......))))(((.(((---((((...))))))).)))..))))))))..))). ( -24.50, z-score = -1.72, R) >droSec1.super_7 1125646 98 + 3727775 AAUCUCCUAAUUUGAGCUGACCCCCGAGUGCUGUAAAUCUUA-CGUGG-AAUUUGCUAUGGUUUUU---UACGAAUCGUAAAAUGCCGGUGCAGCACUAUCGA ........................(((((((((((.......-.((((-......))))(((.(((---((((...))))))).)))..))))))))..))). ( -23.80, z-score = -1.52, R) >droYak2.chr2R 17523942 97 - 21139217 AAUCUUUUA-UUUGAGCUGCCUCCCGAGUGCUGUAAAUCUUA-CGUGG-AAUUUGCUUUGGUUUUU---UACAAAUCGUAAAAUGCCGGUGCAGCACUAUCGA .........-...(((....))).(((((((((((..(((..-...))-).......(((((.(((---(((.....)))))).)))))))))))))..))). ( -23.30, z-score = -1.40, R) >droEre2.scaffold_4845 15824534 97 - 22589142 AAUCUCCUA-UUUGAGCUGCCUCCCGAGUGCUGUAAACCUUA-CGUGG-AAUUUGCUUUGGUUUUU---UACGAGUCGUAAAAUGCCGGUGCAGCACUAUCGA ...(((...-...)))........(((((((((((..((...-...))-........(((((.(((---((((...))))))).)))))))))))))..))). ( -25.30, z-score = -1.49, R) >droAna3.scaffold_12916 12783237 91 - 16180835 GAUUGGUAAAAUUCAGUUGCUU-----GUACCGUAAAUCUUA-CGUGG-AAUUUGCUAUGAAUUUU----ACGAGUCGU-AAAUGCCGGUGCAGGGCUAGGGA ((((.((((((((((...((..-----((.(((((.....))-)).).-.))..))..))))))))----)).))))..-....(((.......)))...... ( -25.00, z-score = -1.63, R) >droWil1.scaffold_180772 991455 89 - 8906247 -----GUUUUCUUCGACAGCUUUUGGCAGUUUCUAA---UUA-CGUGG-AAUUUGCUAGGAAUUUC----AUUCGUUGUCGAAUGCCGGCGUAGAGAUGGGCA -----......(((((((((..(((((((.(((((.---...-..)))-)).)))))))((((...----)))))))))))))((((.((.....).).)))) ( -27.30, z-score = -2.22, R) >droSim1.chr2L_random 647844 84 + 909653 -------------------CCUCCCGAGUGCUGUAAAUCUUUUCGUGGGAAUUUGCUAUGGUUUUUACUUCUUAAUAUAGAAAUGCCGGUGCAGCACUAUCGA -------------------.....(((((((((((.........(((((((((......)))))))))((((......)))).......))))))))..))). ( -20.60, z-score = -1.45, R) >consensus AAUCUCCUA_UUUGAGCUGCCUCCCGAGUGCUGUAAAUCUUA_CGUGG_AAUUUGCUAUGGUUUUU___UACGAAUCGUAAAAUGCCGGUGCAGCACUAUCGA ..........................(((((((((.........(..(....)..)...(((.(((...(((.....)))))).)))..)))))))))..... ( -8.56 = -9.89 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:03 2011