| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,703,772 – 1,703,868 |
| Length | 96 |
| Max. P | 0.641536 |
| Location | 1,703,772 – 1,703,868 |
|---|---|
| Length | 96 |
| Sequences | 9 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 80.46 |
| Shannon entropy | 0.39886 |
| G+C content | 0.31235 |
| Mean single sequence MFE | -16.62 |
| Consensus MFE | -10.62 |
| Energy contribution | -10.23 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.641536 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1703772 96 + 23011544 CAUAAAACUGUGAUUACAUUUGAUUGUC--GAAGAAGCGUUGAUAAGCAAGUGUUGCAUAAUUAUUGAGCGAAAGAAAAAC-GAUGAAACGAGAAAUAC---- ........((((...(((((((.(((((--((.......))))))).)))))))..)))).((((((..(....).....)-)))))............---- ( -18.40, z-score = -1.99, R) >droSim1.chr2L 1712652 93 + 22036055 CAUAAAACUGUGAUUACAUUUGAUUGUC--GA---AGCGUUGAUAAGCAAGUGUUGCAUAAUUAUUGAGCGAAAGAAAAAC-GAUGAAACGAGAAAUAC---- ........((((...(((((((.(((((--((---....))))))).)))))))..)))).((((((..(....).....)-)))))............---- ( -18.70, z-score = -2.15, R) >droSec1.super_14 1638345 93 + 2068291 CAUAAAACUGUGAUUACAUUUGAUUGUC--GA---AGCGUUGAUAAGCAAGUGUUGCAUAAUUAUUGAGCGAAAGAAAAAC-GAUGAAACGAGAAAUAC---- ........((((...(((((((.(((((--((---....))))))).)))))))..)))).((((((..(....).....)-)))))............---- ( -18.70, z-score = -2.15, R) >droYak2.chr2L 1674397 94 + 22324452 CAUAAAACUGUGAUUACAUUUGAUUGUC--AA---AGCGUUGAUAAGCAAGUGUUGCAUAAUUAUUGAGCGAAAGAAAAAAAGAUGAAACGAGAAAUAC---- ........((((...(((((((.(((((--((---....))))))).)))))))..)))).(((((...(....).......)))))............---- ( -17.20, z-score = -2.00, R) >droEre2.scaffold_4929 1747397 93 + 26641161 CAUAAAACUGUGAUUACAUUUGAUUGUC--GA---AGCGUUGAUAAGCAAGUGUUGCAUAAUUAUUGAGCGAAAGAAAAAA-GAUGAAACGUGAAAUAC---- (((.....((((...(((((((.(((((--((---....))))))).)))))))..)))).(((((...(....)......-)))))...)))......---- ( -18.00, z-score = -1.87, R) >droAna3.scaffold_12916 15102418 81 + 16180835 CAUAAAACUGUGAUUACAUUUGAUUAUC--GA---GACGUUGAUGAGCGAAUGUUGCAUAAUUAUUGAGCAAAAGAAGGAAAAAAA----------------- ........((((...(((((((.(((((--((---....))))))).)))))))..))))..........................----------------- ( -14.70, z-score = -1.88, R) >droPer1.super_8 3410159 97 + 3966273 CAUAAAACUGUGAUUACAUUUGAUUGUCUUGUCGAAGCGUUGAUAAGUAAAUGUUGCAUAAUUAUUGAUCGAAAAGAAAAUGGCAAAUACGAAAUAU------ ........((((...(((((((.....((((((((....)))))))))))))))..)))).(((((..((.....)).)))))..............------ ( -12.90, z-score = 0.80, R) >droVir3.scaffold_12963 7806053 98 + 20206255 CAUAAAACUGUGAUUACAUUUGAUUGUC--GA---UGCGUUGAUAAGGAAAUGUUGCAUAAUUGAUGAUUGAUCGAAAUACGAAUGAAAAGAAUGUAAAGUGA ((((....)))).(((((((((((..((--((---((((((........)))))......)))))..)))..(((.....))).......))))))))..... ( -15.80, z-score = -0.36, R) >droGri2.scaffold_15252 10890563 94 + 17193109 CAUAAAACUGUGAUUACAUUUGAUUGUC--GA---UGCGUUGAUAAGAAAAUGUUGCAUAAUUAAUGAUUGGUUGAAAUACGAAUACGAAAUGAAAAAA---- (((.....((((...((((((..(((((--((---....)))))))..))))))..)))).......(((.((......)).))).....)))......---- ( -15.20, z-score = -0.94, R) >consensus CAUAAAACUGUGAUUACAUUUGAUUGUC__GA___AGCGUUGAUAAGCAAGUGUUGCAUAAUUAUUGAGCGAAAGAAAAAC_GAUGAAACGAGAAAUAC____ ........((((...(((((((.(((((.............))))).)))))))..))))........................................... (-10.62 = -10.23 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:58 2011