| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,466,941 – 17,467,066 |
| Length | 125 |
| Max. P | 0.712288 |
| Location | 17,466,941 – 17,467,066 |
|---|---|
| Length | 125 |
| Sequences | 6 |
| Columns | 126 |
| Reading direction | reverse |
| Mean pairwise identity | 74.16 |
| Shannon entropy | 0.50303 |
| G+C content | 0.46035 |
| Mean single sequence MFE | -35.32 |
| Consensus MFE | -18.62 |
| Energy contribution | -20.10 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.712288 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17466941 125 - 23011544 UAAACCUUUAGCCCAGCUUUUGUCCGCUGUGCAAAUCGGUUAUUACUGCAUUUGCAGGCUUUUUCACAUUUAAAUUCGCCUGCGUUCCAUGAGAGUGAAGCUGCCAUUUAACGAACU-GGGCGUGG ....((....((((((..(((((......(((((((((((....)))).)))))))(((..((((((.((((....((....)).....)))).))))))..))).....)))))))-))))..)) ( -39.10, z-score = -2.33, R) >droYak2.chr2R 17506580 121 + 21139217 --AAUUAUUAGU-UAUGUUUUUUCCUCUGUGCACG-CGGUUAUUACUGCAUUUGCAGGCUGUUUCGCAUUUAAAUUCGCCUGCGUUCCAUGAGAGUGAAGCUGCCAUUUAACGAAAU-GGGCGUGG --..........-(((((..(((((((((((.(((-((((....)))))....((((((.((((.......))))..))))))))..))).)))).))))...((((((....))))-))))))). ( -31.90, z-score = -0.51, R) >droEre2.scaffold_4845 15807278 124 + 22589142 UAAACGUUCAGCGCAGCUUUUGUCCUCUGUGCACG-CGGUUAUUACUGCAUUCGCAGGCUGUUUCACAUUUAAAUUCGCCUGCGUUCCAUGAGAGUGAAGCUGCCAUUUAACGAACA-GGGCGUGG ...((((((.((((((..........))))))..(-(((((.(((((.(((.(((((((.((((.......))))..)))))))....)))..))))))))))).............-)))))).. ( -38.90, z-score = -1.11, R) >droSec1.super_7 1108584 125 - 3727775 UAAAAGGUUAAUCCAGCUUUUGUCCGCUGUGCAACUCGAUUAUUACUGCAUUUGCAGGCUGUUUCGCAUUUAAAUUCGCCUGCGUUCCAUGAGAGUGAAGCUGCCAUUUAACGAACU-GGGCGUGG ..(((((((.....)))))))..((((.((.((..(((........(((....)))(((.(((((((.((((....((....)).....)))).))))))).)))......)))..)-).)))))) ( -32.30, z-score = 0.09, R) >droSim1.chr2L 17170718 118 - 22036055 ------GUUAAUCCA-CCUUUGUCCUCUGUGCAACUCGGUUAUUACUGCAUUUGCAGGCUGUUUCGCAUUCAAAUUCGCCUGCGUUCCAUGAGAGUGAAGCUGCCAUUUAACGAACU-GGGCGUGG ------......(((-(....((((....(((((..((((....))))...)))))(((.(((((((.((((....((....)).....)))).))))))).)))............-)))))))) ( -33.70, z-score = -1.27, R) >droWil1.scaffold_180703 1581125 119 + 3946847 CCGACCCUCGGCCCCGCCACAAUAAC---AACAAACAUGAUGUUGUUGUUGUUGUUUUUUGUUACAGAUUUAAAUU----UCCAUUGCGUUUUCACGCAACCAUAGCUUAACGAUCUGGGGCGUGG (((.....))).((((((((((((((---(((((........))))))))))))).........(((((((((.((----....((((((....))))))....)).)))..)))))).)))).)) ( -36.00, z-score = -2.97, R) >consensus UAAACCGUUAGCCCAGCUUUUGUCCUCUGUGCAAAUCGGUUAUUACUGCAUUUGCAGGCUGUUUCACAUUUAAAUUCGCCUGCGUUCCAUGAGAGUGAAGCUGCCAUUUAACGAACU_GGGCGUGG ..........((((...............(((((..((((....))))...)))))(((.(((((((.((((....((....)).....)))).))))))).))).............)))).... (-18.62 = -20.10 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:02 2011