| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,402,519 – 17,402,578 |
| Length | 59 |
| Max. P | 0.724869 |
| Location | 17,402,519 – 17,402,578 |
|---|---|
| Length | 59 |
| Sequences | 5 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 96.61 |
| Shannon entropy | 0.05739 |
| G+C content | 0.56271 |
| Mean single sequence MFE | -19.32 |
| Consensus MFE | -19.32 |
| Energy contribution | -19.16 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.00 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724869 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17402519 59 - 23011544 AACCUUAACCCUCGACUUCUUGGAGGGUCGAUAGGGUCGCGAUCUGUCCGCAUAGGGCA ..((((((((((((((((......)))))))..)))).(((.......))).))))).. ( -19.80, z-score = -0.92, R) >droEre2.scaffold_4845 15740646 59 + 22589142 AACCUUAACCCUCGACUUCUUGGCGGGUCGAUAGGGUCGCGAUCUAUCCGCAUAGGGCA ..((((((((((((((((......)))))))..)))).(((.......))).))))).. ( -19.70, z-score = -1.21, R) >droYak2.chr2R 17438848 59 + 21139217 AACCUUAACCCUCGACUUCUUGGCGGGUCGAUAGGGUCGCGAUCUAUCCGCAUAGGGCA ..((((((((((((((((......)))))))..)))).(((.......))).))))).. ( -19.70, z-score = -1.21, R) >droSec1.super_7 1044154 59 - 3727775 AACCUUAACCCUCGACUUCUUGCCGGGUCGAUAGGGUCGCGAUCUGUCCGCAUAGGGCA ..((((((((((((((((......)))))))..)))).(((.......))).))))).. ( -19.70, z-score = -1.06, R) >droSim1.chr2L 17104957 59 - 22036055 AACUUUAACCCUCGACUUCUUGCCGGGUCGAUAGGGUCGCGAUCUGUCCGCAUAGGGCA .......(((((((((((......)))))))..))))........((((.....)))). ( -17.70, z-score = -0.59, R) >consensus AACCUUAACCCUCGACUUCUUGGCGGGUCGAUAGGGUCGCGAUCUGUCCGCAUAGGGCA ..((((((((((((((((......)))))))..)))).(((.......))).))))).. (-19.32 = -19.16 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:48:00 2011