| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,381,384 – 17,381,475 |
| Length | 91 |
| Max. P | 0.983516 |
| Location | 17,381,384 – 17,381,475 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 73.65 |
| Shannon entropy | 0.46570 |
| G+C content | 0.54655 |
| Mean single sequence MFE | -33.03 |
| Consensus MFE | -19.30 |
| Energy contribution | -20.84 |
| Covariance contribution | 1.54 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.14 |
| SVM RNA-class probability | 0.983516 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17381384 91 - 23011544 -----GCCACCCUCGGCGAAGGGUUUUCGCAAGUGGGGGCGGUGGACUUUAAGAGGUGGCAACGGCUCUUAGCCUUAAUGGCUUGCAACCACAAGG -----(((.(((...((((((...))))))....)))))).((((....((((((.((....)).))))))(((.....)))......)))).... ( -38.90, z-score = -2.44, R) >droSim1.chr2L 17083922 91 - 22036055 -----GCCACCCUCGGCGAAGGGUUUUCGCAUGUGGGGGCGGUGGACUUUAAGAGGUGGCAACGGCUCUUAGCCUUAAUGGCUUGCAACCACAAGG -----(((.(((.((((((((...)))))).)).)))))).((((....((((((.((....)).))))))(((.....)))......)))).... ( -39.80, z-score = -2.75, R) >droSec1.super_7 1019643 91 - 3727775 -----GCCACCCUCGGCGAAGGGUUUUCGCAAGUGGGGGCGGUGGACUUUAAGAGGUGGCAACGGCUCUUAGCCUUAAUGGCUUGCAACCACAAGG -----(((.(((...((((((...))))))....)))))).((((....((((((.((....)).))))))(((.....)))......)))).... ( -38.90, z-score = -2.44, R) >droYak2.chr2R 17416891 90 + 21139217 -----GCCACCCUCUGCGAAGGGUUUU-GCAUGUGGGGGCGGUGGACUUUAAGAGGUGGCAACGGCUCUUAGCCUUAAUGGCUUGCAACCACAAGG -----(((.(((.(((((((....)))-))).).)))))).((((....((((((.((....)).))))))(((.....)))......)))).... ( -38.20, z-score = -2.34, R) >droEre2.scaffold_4845 15717021 96 + 22589142 GUGAAGCCACCCUCGGCGAAGGGUUUUCGCAUGUGGGGGCGGUGGACCUUAAGAGGUGGCAACGGCUCUUAGCCUUAAUGGCUUGCAACCACAAGG .....(((.(((.((((((((...)))))).)).)))))).((((....((((((.((....)).))))))(((.....)))......)))).... ( -40.00, z-score = -1.99, R) >dp4.chr4_group3 3462468 70 - 11692001 ------------------------UCUACCCCCCAAGAAAUGUACG-UUGAAGAGGUGGCAACAUCUCUUUGUACUAAUGGC-UGCAACCACAAAC ------------------------.................((((.-..(((((((((....)))))))))))))...(((.-.....)))..... ( -17.70, z-score = -2.04, R) >droPer1.super_1 4939963 70 - 10282868 ------------------------UCUACCCCCCAAGAAAUGUACG-UUGAAGAGGUGGCAACAUCUCUUUGUACUAAUGGC-UGCAACCACAAGC ------------------------.................((((.-..(((((((((....)))))))))))))...(((.-.....)))..... ( -17.70, z-score = -1.62, R) >consensus _____GCCACCCUCGGCGAAGGGUUUUCGCAUGUGGGGGCGGUGGACUUUAAGAGGUGGCAACGGCUCUUAGCCUUAAUGGCUUGCAACCACAAGG ........(((((......)))))........((((..((.........((((((.((....)).))))))(((.....)))..))..)))).... (-19.30 = -20.84 + 1.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:58 2011