| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,373,630 – 17,373,720 |
| Length | 90 |
| Max. P | 0.557812 |
| Location | 17,373,630 – 17,373,720 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 72.62 |
| Shannon entropy | 0.52377 |
| G+C content | 0.55412 |
| Mean single sequence MFE | -28.99 |
| Consensus MFE | -14.71 |
| Energy contribution | -14.68 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557812 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17373630 90 - 23011544 ----------------UAAGCUAUGCACACUCGA--AUAGCUCCAGUAAUGGAUCGUCGCCAGAUC---AGGACGAUGACAUAAUGCUGGACCACCA------GGAGCGCACUGUUC ----------------..(((..(((.(......--.....(((((((.((..((((((((.....---.)).))))))..)).)))))))((....------)).).)))..))). ( -26.60, z-score = -1.52, R) >droGri2.scaffold_15252 16620045 106 - 17193109 UCAUCGCACAACAACAUCAGCUACGCCCACUCGA--ACAGCUCGAGCAACAGCUCAUCACCGGAUC---AGGAUGAGGAUCUGAUGCUGGACCAUCA------GGAGCGCAGCGUUC ...................(((.(((((......--.((((..((((....)))).....((((((---........))))))..))))........------)).))).))).... ( -29.16, z-score = -0.62, R) >droVir3.scaffold_13246 2059026 106 + 2672878 UCCGCUACGGAGCACAUCAGCUAUGUGCACUCGA--ACAGCUCCAGCAAUGGCUCGUCGCCGGACC---AGGACGAUGAUCUGAUGCUGGACCAUCA------GGAGCGCAGCGUAA ..((((.(((.((((((.....)))))).).)).--...(((((((((.(((.((((((((.....---.)).)))))).))).)))))))((....------))...))))))... ( -40.30, z-score = -1.59, R) >droMoj3.scaffold_6500 5361901 96 - 32352404 ---------GAGCACAUUAGCUACGCACACUCGA--ACAGCUCCAGCAACGGCUCGUCACCGGAUC---AGGACGAGGAUCUGAUGCUGGAUCAUCA---UCCAGAGCGCACC---- ---------.(((......)))..((.(.((.((--...(.(((((((.(((((((((........---..))))))...))).))))))).)....---)).)).).))...---- ( -27.50, z-score = -0.85, R) >droWil1.scaffold_180703 3237160 90 + 3946847 ---------------------AAAGAACACUUGAUUAUAGCUCUAGCAAUGGUUCAUCACCCGAUCAUGAGCAUGAUGAUCUAAUGUUGGAUCAUCA------GGAAAGGAGUGUCC ---------------------.....((((((.......((((.......(((.....))).......)))).((((((((((....))))))))))------......)))))).. ( -25.44, z-score = -1.73, R) >droPer1.super_1 4930845 96 - 10282868 ----------------UCAGCUACGCGCACUCGA--ACAGCUCCAGCAAUGGCUCGACGCCGGACC---AGGACGAGGACCUCAUGAUGGACCAGGACCCCCAGGAGCGGUCACUCC ----------------...((.....))....((--...(((((......(((.....)))((.((---(....(((...)))....))).)).((....)).)))))..))..... ( -24.90, z-score = 1.54, R) >dp4.chr4_group3 3453337 96 - 11692001 ----------------UCAGCUACGCGCACUCGA--ACAGCUCCAGCAAUGGCUCGACGCCGGACC---AGGACGAGGACCUCAUGAUGGACCAGGACCCCCAGGAGCGGUCACUCC ----------------...((.....))....((--...(((((......(((.....)))((.((---(....(((...)))....))).)).((....)).)))))..))..... ( -24.90, z-score = 1.54, R) >droAna3.scaffold_12916 12683113 87 + 16180835 ----------------UCAGCUACACGCACUCGA-----GCUCCAGCAACGGUUCGUCGCCGGACC---AGGACGAGGACAUCAUGCUGGACCA------CCAGGAGCGAACUGCCC ----------------...((....(((.((.(.-----(.(((((((...((((.(((((.....---.)).)))))))....))))))).).------).))..)))....)).. ( -28.20, z-score = -0.79, R) >droEre2.scaffold_4845 15709601 90 + 22589142 ----------------UGAGCUAUGCACACUCGA--AUAGCUCCAGUAAUGGAUCGUCGCCAGAUC---AGGACGACGACAUAAUGCUGGACCACCA------GGAGCGAACUGUUC ----------------.(((.........)))((--((((.(((((((.((..((((((((.....---.)).))))))..)).)))))))((....------))......)))))) ( -28.40, z-score = -2.10, R) >droYak2.chr2R 17409080 90 + 21139217 ----------------UGAGCUAUGCACACUCAA--AUAGCUCCAGUAAUGGCUCGUCGCCAGAUC---AGGACGACGACAUAAUGCUGGACCACCA------GGAGCGAACUGUUC ----------------.(((((((..........--)))))))((((..(.((((((((((.....---.)).)))).........((((....)))------))))).)))))... ( -30.10, z-score = -2.62, R) >droSec1.super_7 1011684 90 - 3727775 ----------------UGAGCUAUGCACACUCGA--AUAGCUCCAGUAAUGGAUCGUCGCCAGAUC---AGGACGACGAUAUAAUGCUGGAUCACCA------GGAGCGCACUGUUC ----------------.((((..(((.(....).--...(((((((((.((.(((((((((.....---.)).))))))).)).))))((....)).------))))))))..)))) ( -31.50, z-score = -2.60, R) >droSim1.chr2L 17075860 90 - 22036055 ----------------UGAGCUAUGCACACUCGA--AUAGCUCCAGUAAUGGAUCGUCGCCAGAUC---AGGACGACGACAUAAUGCUGGACCACCA------GGAGCGCACUGUUC ----------------.((((..(((.(......--.....(((((((.((..((((((((.....---.)).))))))..)).)))))))((....------)).).)))..)))) ( -30.90, z-score = -2.57, R) >consensus ________________UCAGCUAUGCACACUCGA__AUAGCUCCAGCAAUGGCUCGUCGCCGGAUC___AGGACGAGGACAUAAUGCUGGACCACCA______GGAGCGCACUGUUC .......................(((.(.............(((((((.((..((.(((((.........)).))).))..)).))))))).............).)))........ (-14.71 = -14.68 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:55 2011