| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,354,970 – 17,355,064 |
| Length | 94 |
| Max. P | 0.652694 |
| Location | 17,354,970 – 17,355,064 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 67.31 |
| Shannon entropy | 0.55585 |
| G+C content | 0.43643 |
| Mean single sequence MFE | -24.75 |
| Consensus MFE | -7.93 |
| Energy contribution | -7.66 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.652694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17354970 94 + 23011544 -----UGUUGUUUUAACGUCACACACACA-CUACCACAAAAGGG----CAUUAUG-----UCCAUUGUUG---GGCAAAUAUAUAGACAAUGGGCAAAUGCCCUUGUUCAAG -----........................-.........(((((----((((.((-----(((((((((.---............))))))))))))))))))))....... ( -27.82, z-score = -2.66, R) >droSim1.chr2L 17052462 92 + 22036055 -----UGUUGUUUUAACGCCACACACACA-CUACCACAAAAGGG----CAUUAUG-----UCCAUUGUUC---AGCAAAUAUA--GACAAUGGGCAAAUGCCCUUGUUCAAG -----(((.((......)).)))......-.........(((((----((((.((-----((((((((..---(.......).--.)))))))))))))))))))....... ( -28.10, z-score = -3.66, R) >droSec1.super_7 993068 92 + 3727775 -----UGUUGUUUUAACGCCAAACAUACA-CUACAACAAAAGGG----CAUUAUG-----UCCAUUGUUG---UACAAAUAUA--GACAAUGGGCACAUGCCCUUGUUCAAG -----((((((..................-..)))))).(((((----(((..((-----(((((((((.---..........--))))))))))).))))))))....... ( -29.35, z-score = -3.94, R) >droYak2.chr2R 17390573 88 - 21139217 -----UGCUGUAUUAGCGC--AACUCAC--UUACAA-AAGAGGG----CGUUUUA-----UCCAUUGUUG---GCCAAAUAUA--GACAAUGGGAAAAUCCUCUUGUUCAAG -----.((((...))))..--......(--((....-((((((.----.(((((.-----(((((((((.---..........--))))))))))))))))))))....))) ( -20.70, z-score = -1.44, R) >droAna3.scaffold_12916 12663566 96 - 16180835 UGUGCAAUUGUUCAAGUGCCACGCCCACGUCCACACACAAACAA----UAUCCC------CCUAUUGUUG---GACACGCAUA--GACAAUGGG-AAAUCCUCUUAUUCAAG (((((...(((((..(((..(((....)))...)))...(((((----((....------..))))))))---)))).)))))--...((((((-(.....))))))).... ( -19.00, z-score = -0.82, R) >dp4.chr4_group4 293179 108 + 6586962 --UACAAUUGUUGAAGAGCCACGCCCACGCCCACGCCCACACCAGCCCUACUCCACCAGCUCCAUUGUUUCGCGGCGAGUGCA--GACAAUGGGGAAAUCCUCUUAUUCGAG --.....(((...(((((................((........)).............((((((((((((((.....))).)--)))))))))).....)))))...))). ( -23.50, z-score = -0.03, R) >consensus _____UGUUGUUUUAACGCCACACACACA_CUACAACAAAAGGG____CAUUAUG_____UCCAUUGUUG___GGCAAAUAUA__GACAAUGGGCAAAUCCCCUUGUUCAAG ............................................................(((((((((................))))))))).................. ( -7.93 = -7.66 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:53 2011