| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,335,467 – 17,335,518 |
| Length | 51 |
| Max. P | 0.856424 |
| Location | 17,335,467 – 17,335,518 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 92.76 |
| Shannon entropy | 0.10310 |
| G+C content | 0.36405 |
| Mean single sequence MFE | -8.47 |
| Consensus MFE | -7.23 |
| Energy contribution | -7.57 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.856424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17335467 51 - 23011544 UAUAUUCUUAAGAAUAGAAACGCAAACCCUUGACUUCUGGGAGCUAAGCUG ..(((((....))))).....((...(((.........))).))....... ( -6.80, z-score = -0.11, R) >droSec1.super_7 969198 50 - 3727775 UAUAUUCUUAUGAAUA-AAACGCAAAACCUAGACUUCUGGGACCUAAGCUG ..(((((....)))))-..........(((((....))))).......... ( -9.30, z-score = -2.94, R) >droSim1.chr2L 17034727 50 - 22036055 UAUAUUCUUAUGAAUA-AAACGCAAAACCUAGACUUCUGGGAACUAAGCUG ..(((((....)))))-..........(((((....))))).......... ( -9.30, z-score = -3.30, R) >consensus UAUAUUCUUAUGAAUA_AAACGCAAAACCUAGACUUCUGGGAACUAAGCUG ..(((((....)))))...........(((((....))))).......... ( -7.23 = -7.57 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:48 2011