| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,323,093 – 17,323,186 |
| Length | 93 |
| Max. P | 0.996563 |
| Location | 17,323,093 – 17,323,186 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 86.38 |
| Shannon entropy | 0.25920 |
| G+C content | 0.35376 |
| Mean single sequence MFE | -25.64 |
| Consensus MFE | -21.84 |
| Energy contribution | -22.19 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.10 |
| Mean z-score | -3.05 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.95 |
| SVM RNA-class probability | 0.996563 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17323093 93 - 23011544 AGGGAUAACACAUAUAGUUAUUUAUCAAGUUAUAAGUUAUGAUGUCAGCAUGCUGGCAUUAUGUGACUGAUAAACCCGAACACAAACACAAGU--------- .(((.((((.......))))(((((((.(((((.....((((((((((....)))))))))))))))))))))))))................--------- ( -25.70, z-score = -3.44, R) >droAna3.scaffold_12916 12635711 93 + 16180835 AGGGAUAACACAUAUAGUUAUUUAUCAAGUUAUAAGUUAUGAUGUCAGCAUGCUGGCAUUAUGUGACUGAUAAACCCAAGCACAAACACAAAC--------- .(((.((((.......))))(((((((.(((((.....((((((((((....)))))))))))))))))))))))))................--------- ( -25.70, z-score = -3.56, R) >droEre2.scaffold_4845 15659480 93 + 22589142 AGGGAUAACACAUAUAGUUAUUUAUCAAGUUAUAAGUUAUGAUGUCAGCACGCUGGCAUUAUGUGACUGAUAAACCCGAACACAAACACAAGU--------- .(((.((((.......))))(((((((.(((((.....((((((((((....)))))))))))))))))))))))))................--------- ( -25.70, z-score = -3.70, R) >droYak2.chr2R 17355406 93 + 21139217 AGGGAUAACACAUAUAGUUAUUUAUCAAGUUAUAAGUUAUGAUGUCAGCAUGCUGGCAUUAUGUGACUGAUAAACCCGAACACAAACACAAGU--------- .(((.((((.......))))(((((((.(((((.....((((((((((....)))))))))))))))))))))))))................--------- ( -25.70, z-score = -3.44, R) >droSec1.super_7 956935 93 - 3727775 AGGGAUAACACAUAUAGUUAUUUAUCAAGUUAUAAGUUAUGAUGUCAGCAUGCUGACAUUAUGUGACUGAUAAACCCGAACACAAACACAAGU--------- .(((.((((.......))))(((((((.(((((.....((((((((((....)))))))))))))))))))))))))................--------- ( -26.30, z-score = -4.07, R) >droSim1.chr2L 17021482 93 - 22036055 AGGGAUAACACAUAUAGUUAUUUAUCAAGUUAUAAGUUAUGAUGUCAGCAUGCUGGCAUUAUGUGACUGAUAAACCCGAACACAAACACAAGU--------- .(((.((((.......))))(((((((.(((((.....((((((((((....)))))))))))))))))))))))))................--------- ( -25.70, z-score = -3.44, R) >droMoj3.scaffold_6500 5296966 99 - 32352404 AGGGUAACAAGACAUAGUUAUUUAUCAUGUUAUAAGUUAUGAUGUCAGCAUGUUGGCAUUAUGUGACUGAUAAGCGCAAGAAAAUGAGC-AGACACACAC-- ...(((((........)))))((((((.(((((.....((((((((((....)))))))))))))))))))))((.((......)).))-..........-- ( -20.80, z-score = -0.67, R) >droVir3.scaffold_13246 2004038 102 + 2672878 AGGGCUAAAAGGUUUAGUUAUUUAUCAUGUUAUAAGUUAUGAUGUCAGCGUGCUGGCAUUAUGUGACUGAUAAGCGCAAGAAAAUGAGCAAGGCUCACACGC .(((((.....(((((....(((((((.(((((.....((((((((((....))))))))))))))))))))))(....)....)))))..)))))...... ( -29.50, z-score = -2.09, R) >consensus AGGGAUAACACAUAUAGUUAUUUAUCAAGUUAUAAGUUAUGAUGUCAGCAUGCUGGCAUUAUGUGACUGAUAAACCCGAACACAAACACAAGU_________ .(((.((((.......))))(((((((.(((((.....((((((((((....)))))))))))))))))))))))))......................... (-21.84 = -22.19 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:47 2011