| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,322,953 – 17,323,005 |
| Length | 52 |
| Max. P | 0.982503 |
| Location | 17,322,953 – 17,323,005 |
|---|---|
| Length | 52 |
| Sequences | 8 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 71.27 |
| Shannon entropy | 0.51901 |
| G+C content | 0.50838 |
| Mean single sequence MFE | -17.77 |
| Consensus MFE | -9.45 |
| Energy contribution | -9.59 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.11 |
| SVM RNA-class probability | 0.982503 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17322953 52 - 23011544 GGCGCUCACUU-AGGCGCCAG--------CUUUGGUUACCCUU--CUAAAGGGUAUAAUAGCU ((((((.....-.))))))((--------((.....((((((.--....))))))....)))) ( -22.50, z-score = -3.57, R) >droSim1.chr2L 17021334 52 - 22036055 GGCGCUCACUU-AGGCGCCAG--------CUUUGGUUACCCUU--CUAAGAGGUAUAAUAGCU ((((((.....-.))))))((--------((.....((((((.--...)).))))....)))) ( -18.70, z-score = -2.10, R) >droSec1.super_7 956783 52 - 3727775 GGCGCUCACUU-AGGCGCCAG--------CUUUGGUUACCCUU--CUAAGAGUUAUAAUAGCU ((((((.....-.))))))((--------((...((.((.((.--...)).)).))...)))) ( -15.20, z-score = -1.20, R) >droYak2.chr2R 17355265 51 + 21139217 GGCCCUCACUU-AGGCGCCAG--------CUUGAGUUUCCCUU--UUAAGAGGUAU-AUAGCU (((....((((-((((....)--------)))))))...((((--....))))...-...))) ( -13.20, z-score = -0.51, R) >droEre2.scaffold_4845 15659340 52 + 22589142 GGCGCUCACUU-AGGCGCCAG--------CUCAAGUUACUCUU--UGAAGAGGUAUAAUGGCU ((((((.....-.))))))((--------((.......((((.--...)))).......)))) ( -17.34, z-score = -1.84, R) >droAna3.scaffold_12916 12635568 51 + 16180835 GGCGCUCACUUAAGGGGCCAA--------GAUUUGAUGCCCUU--CCUGGAAGGA--AUACCU (((.(((......))))))..--------..........((((--(...))))).--...... ( -12.00, z-score = 0.56, R) >dp4.chr4_group4 250008 60 - 6586962 GGCGCUCACUU-AGGCGCCAACC--CUCUCUCUCUAUACCCUCUACCAGAGGGUGUUUUAGUU ((((((.....-.))))))....--..........((((((((.....))))))))....... ( -22.70, z-score = -4.28, R) >droPer1.super_68 145283 60 + 338515 GGCGCUCACUU-AGGCGCCAACCCUCUCUCUCUCUAUACCCUUUACCAGAGGGUGUUUUAG-- ((((((.....-.))))))................((((((((.....)))))))).....-- ( -20.50, z-score = -3.98, R) >consensus GGCGCUCACUU_AGGCGCCAG________CUUUGGUUACCCUU__CUAAGAGGUAUAAUAGCU ((((((.......))))))....................((((......)))).......... ( -9.45 = -9.59 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:46 2011