| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,321,873 – 17,321,969 |
| Length | 96 |
| Max. P | 0.986342 |
| Location | 17,321,873 – 17,321,969 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 97.29 |
| Shannon entropy | 0.04771 |
| G+C content | 0.40298 |
| Mean single sequence MFE | -16.24 |
| Consensus MFE | -16.23 |
| Energy contribution | -16.07 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.24 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.23 |
| SVM RNA-class probability | 0.986342 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17321873 96 - 23011544 ACUGCAAUUUAUUUUGCAGUUACCCAACUCCCUGUUCAUAUUUGUUUUGCUCUUUUCCCAGCUUCAGUCGAGCUUAAUCUAACGCACUCGCAAACA (((((((......)))))))....................(((((..(((.........(((((.....))))).........)))...))))).. ( -16.17, z-score = -2.32, R) >droEre2.scaffold_4845 15658250 95 + 22589142 ACUGCAAUUUAUUUUGCAGUUACCCAAC-CCCGGUUCAUAUUUGUUUUGCUCCUUUCCCAGCUUCAGUCGAGCUUAAUCUAACGCACUCGCAAACA (((((((......)))))))...((...-...))......(((((..(((.........(((((.....))))).........)))...))))).. ( -16.47, z-score = -1.96, R) >droYak2.chr2R 17353531 96 + 21139217 ACUGCAAUUUAUUUUGCAGUUACCCAACUCCCUGUUCAUAUUUGUUUUGCUCUUUUCCCAGCUUCAGUCAAGCUUAAUCUAACGCACUCGCAAACA (((((((......)))))))....................(((((..(((.........(((((.....))))).........)))...))))).. ( -15.77, z-score = -2.68, R) >droSec1.super_7 955707 96 - 3727775 ACUGCAAUUUAUUUUGCAGUUACCCAACUCCCUGUUCAUAUUUGUUUUGCUCUUUUACCAGCUUCAGUUGAGCUUAAUCUAACGCACUCGCAAACA (((((((......))))))).............(((((...(((....(((........)))..))).)))))..........((....))..... ( -16.60, z-score = -2.08, R) >droSim1.chr2L 17020261 96 - 22036055 ACUGCAAUUUAUUUUGCAGUUACCCAACUCCCUGUUCAUAUUUGUUUUGCUCUUUUACCAGCUUCAGUCGAGCUUAAUCUAACGCACUCGCAAACA (((((((......)))))))....................(((((..(((.........(((((.....))))).........)))...))))).. ( -16.17, z-score = -2.14, R) >consensus ACUGCAAUUUAUUUUGCAGUUACCCAACUCCCUGUUCAUAUUUGUUUUGCUCUUUUCCCAGCUUCAGUCGAGCUUAAUCUAACGCACUCGCAAACA (((((((......)))))))....................(((((..(((.........(((((.....))))).........)))...))))).. (-16.23 = -16.07 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:45 2011