| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,315,784 – 17,315,886 |
| Length | 102 |
| Max. P | 0.631591 |
| Location | 17,315,784 – 17,315,886 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 73.56 |
| Shannon entropy | 0.54362 |
| G+C content | 0.36330 |
| Mean single sequence MFE | -21.62 |
| Consensus MFE | -11.08 |
| Energy contribution | -12.47 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.631591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17315784 102 - 23011544 GCUUGUUGAUAAAUAAAUAUGACAACAAAAUGUUUGCACAAGAUAAAUGUGUAAGCAAGCUG-ACAACAAGCUAAGGUAAAAAGGCAUUGAAGGUGCGUUUCA ((((((((...........((....))...((((((((((.......)))))))))).....-.))))))))........(((.((((.....)))).))).. ( -25.70, z-score = -2.24, R) >droWil1.scaffold_180703 795359 103 - 3946847 UUUUGUGUCCCAAUGAAUCAAAAUACAAAAUUUGCAUGAAAAUGAAACUUACAUAAAAUCUAUAGAUUGAACUCUAAGGAGUCCUAUUCUGCGAUGAAUUCCA ((((((((..............)))))))).(((((.(((...((..((((.....((((....))))......))))...))...))))))))......... ( -13.24, z-score = -0.07, R) >droAna3.scaffold_12916 12629504 89 + 16180835 GCCUGUUGAUAAAUAAAUAUGACAACAAAAUGUUCGCACAAGAUAAA-------------UG-ACAACCAGCAGAGGUGGCGCGAGAGGUACACUGCGUUUCG ((((((((.((........)).)))))....................-------------..-...(((......)))))).(((((.((.....)).))))) ( -14.70, z-score = 1.03, R) >droSec1.super_7 949660 102 - 3727775 GCUUGUUGAUAAAUAAAUAUGACAACAAAAUGUUUGCGCAAGAGAAAUGUGUAAGCAAGCUG-ACAACAAGCUAAGGUAAAAAGGCAUGGAAGGUUCGUUUCA ((((((((...........((....))...((((((((((.......)))))))))).....-.))))))))...........((.(((((...))))).)). ( -21.80, z-score = -0.92, R) >droEre2.scaffold_4845 15652592 102 + 22589142 GCUUGUUGAUAAAUAAAUAUGACAACAAAAUGUUUGCACAAGAUAAAUGUGUAAGCAAGCUG-ACAAGAAGCUGAGGUAAAAAGGCACUGAAGGUGCGUGCCA ..((((((.((........)).))))))..((((((((((.......))))))))))((((.-......))))..((((.....((((.....)))).)))). ( -26.80, z-score = -2.25, R) >droYak2.chr2R 17348013 102 + 21139217 GCUCGUUGAUAAAUAAAUAUGACAACAAAAUGUUUGCACAAGAUAAAUGUGUAAGCAAGCUG-ACAACAAGCUGAGGUAAAAAGGCAUUGAAGGUGCGUUUCA .(((((((.((........)).))))....((((((((((.......))))))))))((((.-......)))))))....(((.((((.....)))).))).. ( -23.70, z-score = -1.35, R) >droSim1.chr2L 17014161 102 - 22036055 GCUUGUUGAUAAAUAAAUAUGACAACAAAAUGUUUGCACAAGAUAAAUGUGUAAGCAAGCUG-ACAACAAGCUAAGGUAAAAAGGCAUGGAAGGUGCGUUUCA ((((((((...........((....))...((((((((((.......)))))))))).....-.))))))))........(((.((((.....)))).))).. ( -25.40, z-score = -2.19, R) >consensus GCUUGUUGAUAAAUAAAUAUGACAACAAAAUGUUUGCACAAGAUAAAUGUGUAAGCAAGCUG_ACAACAAGCUAAGGUAAAAAGGCAUGGAAGGUGCGUUUCA ((((((((...........((....))...((((((((((.......)))))))))).......))))))))............................... (-11.08 = -12.47 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:45 2011