| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,313,680 – 17,313,771 |
| Length | 91 |
| Max. P | 0.859130 |
| Location | 17,313,680 – 17,313,771 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 83.16 |
| Shannon entropy | 0.31515 |
| G+C content | 0.41697 |
| Mean single sequence MFE | -26.67 |
| Consensus MFE | -19.04 |
| Energy contribution | -19.59 |
| Covariance contribution | 0.55 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.859130 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17313680 91 - 23011544 UAUGUGG----UUAUGUGGUGGCGAAAGUCGCGUUGAGCAUACUAACACUUUUUUG------------UAUGUUUGCUUAGCUUAGGUUUUUACCUGGCAAAAACGC ...(((.----((.(((.(((((....)))))((((((((.((..(((......))------------)..)).)))))))).(((((....)))))))).)).))) ( -27.80, z-score = -2.30, R) >droSim1.chr2L 17012037 91 - 22036055 GAUGUGG----UUAUGUGGUGGCGAAAGUCGCGUCGAGCAUACUAACACUUUUUUG------------UAUGUUUGCUUAGCUUAGGUUUUUACCUGGCAAAAAAGC ..(((((----(((....(((((....)))))(.(((((((((............)------------))))))))).)))))(((((....))))))))....... ( -25.60, z-score = -1.56, R) >droYak2.chr2R 17345921 91 + 21139217 GAUGUGG----UUAUGUGGUGGCGAAAGUCGCGUUGAGCAUACUAACACUUUUUUG------------UAUGUUUGCUUAGCUUAGGUUUUUACCUGGCAAAAAAGC ...((..----((.(((.(((((....)))))((((((((.((..(((......))------------)..)).)))))))).(((((....)))))))).))..)) ( -27.00, z-score = -2.13, R) >droEre2.scaffold_4845 15650610 91 + 22589142 GAUGUGG----UUAUGUGGUGGCGAAAGUCGCGUUGAGCAUACUAACACUUUUUUG------------UAUGUUUGCUUAGCUUAGGUUUUUACCUGGCAAAAAAGC ...((..----((.(((.(((((....)))))((((((((.((..(((......))------------)..)).)))))))).(((((....)))))))).))..)) ( -27.00, z-score = -2.13, R) >droSec1.super_7 947536 91 - 3727775 GAUGUGG----UUAUGUGGUGGCGAAAGUCGCGUUGAGCAUACUAACACUUUUUUG------------UAUGUUUGCUUAGCUUAGGUUUUUACCUGGCAAAAAAGC ...((..----((.(((.(((((....)))))((((((((.((..(((......))------------)..)).)))))))).(((((....)))))))).))..)) ( -27.00, z-score = -2.13, R) >droAna3.scaffold_12916 12627727 95 + 16180835 GGUGUGGAAAAUUGGAGGCUGGCGAGUGUCGCGUUGAGCAUACUAACACUUUUUUG------------UAUGUUUGCUUAGCUUAGGUUUCCACCUGACAAAAAGGC ............((((((((.(((.....)))((((((((.((..(((......))------------)..)).))))))))...))))))))(((.......))). ( -27.50, z-score = -1.14, R) >droVir3.scaffold_13246 670721 90 - 2672878 ----------------UGGCAGAGUACCGCGCGCUGAGCAUACUAACACUUUUUUGCAUGUUGGCCAACAUGUUUGCUUAGCUUACG-UUAUACCUGACAAAAAAAA ----------------((.(((.(((..(((.((((((((...............(((((((....))))))).))))))))...))-)..)))))).))....... ( -24.79, z-score = -1.73, R) >consensus GAUGUGG____UUAUGUGGUGGCGAAAGUCGCGUUGAGCAUACUAACACUUUUUUG____________UAUGUUUGCUUAGCUUAGGUUUUUACCUGGCAAAAAAGC ..................(((((....)))))((((((((.((............................)).))))))))((((((....))))))......... (-19.04 = -19.59 + 0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:44 2011