| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,306,180 – 17,306,289 |
| Length | 109 |
| Max. P | 0.665719 |
| Location | 17,306,180 – 17,306,289 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 76.29 |
| Shannon entropy | 0.44980 |
| G+C content | 0.48219 |
| Mean single sequence MFE | -29.82 |
| Consensus MFE | -14.60 |
| Energy contribution | -16.97 |
| Covariance contribution | 2.37 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.665719 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17306180 109 - 23011544 UCAGUGUGGCAUCUCCAUCUUGCAAC--UCGACAAAGCUGCAGUUCGGCUUCCCUGGGGAUACAAUAUAUUUCCGGAGACUCCGC----CUUCCUUUGCAGUUUUGCAUAUUUUU ..(((((((((.........)))...--....(((((((((((...(((.((.((((..(((.....)))..)))).))....))----).....)))))))))))))))))... ( -32.10, z-score = -2.29, R) >droSim1.chr2L 17002986 109 - 22036055 UCAGUGUGGCAUCUCCAUCUUGCAAC--UCCACAAAGCUGCAGUUCGGCUUCCCUGGGGAUACAAUAUAUUUCCGGAGACUCCGC----CUUCCUUUGCAGUUUUGCAUAUUUUU ..(((((((((.........)))...--....(((((((((((...(((.((.((((..(((.....)))..)))).))....))----).....)))))))))))))))))... ( -32.10, z-score = -2.53, R) >droSec1.super_7 939969 109 - 3727775 UCAGUGUGGCAUCUCCAUCUUGCAAC--UCGACAAAGCUGCAGUUCGGCUUCCCUGGGGAUACAAUAUAUUUCCGGAGACUCCGC----CUUCCUUUGCAGUUUUGCAUAUUUUU ..(((((((((.........)))...--....(((((((((((...(((.((.((((..(((.....)))..)))).))....))----).....)))))))))))))))))... ( -32.10, z-score = -2.29, R) >droYak2.chr2R 17338432 108 + 21139217 UCAGUGUGGCAUCUCCUUCUUGCAAC--UAUACAGAGCUGCAGUUCGGCUUCCCCGGGGAUACAAUAUAUUUCCCGAGACUCCGC----CUUCCUUUGCAGUUUUGCAUAUUUU- ..(((((((((.........)))...--....(((((((((((...(((.((..((((((..........)))))).))....))----).....)))))))))))))))))..- ( -30.00, z-score = -2.12, R) >droEre2.scaffold_4845 15643387 110 + 22589142 GCAGUGUGGCUUCUCCAUCUUGCAUCCAUAUACACAGCUGCAGUUCGGCUUCCCUGGGGAUGCAAUAUAUUGCCCGAGACUCCGC----CUUCCUUUGCAGUUUUGCAUAUUUU- ((((.((((.....)))).))))....((((.((.((((((((...(((.(((....))).((((....))))..........))----).....)))))))).)).))))...- ( -29.40, z-score = -0.67, R) >dp4.chr4_group4 226220 114 - 6586962 UCCGGAAGUUGUGCUCGAAAUAUCUUUGGAAUGGAAGAAACUUUCGCUCUCCCCCCCAGCCCCCAACCACCCCCAGAGAUUACGCAGCAGUUGCCUUGCACUUUUGCAUAUCCC- ...(((.....((((((....((((((((...(((((...)))))(((.........)))............))))))))..)).)))).......((((....))))..))).- ( -23.20, z-score = -0.55, R) >consensus UCAGUGUGGCAUCUCCAUCUUGCAAC__UAGACAAAGCUGCAGUUCGGCUUCCCUGGGGAUACAAUAUAUUUCCGGAGACUCCGC____CUUCCUUUGCAGUUUUGCAUAUUUU_ ..(((((((((.........))).........(((((((((((..(((..((.(.(((((((.....))))))).).))..)))...........)))))))))))))))))... (-14.60 = -16.97 + 2.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:41 2011