| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,283,833 – 17,283,936 |
| Length | 103 |
| Max. P | 0.958584 |
| Location | 17,283,833 – 17,283,936 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 70.25 |
| Shannon entropy | 0.52002 |
| G+C content | 0.59662 |
| Mean single sequence MFE | -36.65 |
| Consensus MFE | -20.56 |
| Energy contribution | -21.60 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.958584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17283833 103 + 23011544 ------UGGGGGAAGGGGUGGUGGCAGUUCAUAGGGGGGCGUCUAAAUGGUAGGGGCGUGGCAGCGUGA--UGGGGUCAGCCCGAAGCUGCUGCUGCGUCGCUUAUAAAUG ------................(((.((((......)))))))......(((((((((..(((((((..--((((.....))))..)).)))))..)))).)))))..... ( -34.80, z-score = -0.69, R) >droSec1.super_7 905121 89 + 3727775 --------------UGGCGGGUGGGGGU------GGUGGCGUCUAAAUGGUAGGGGCGUGGCAGCGUGA--UGGGGUCAGCCCGAAGCUGCUGCUGCGUCGCUUAUAAAUG --------------...((..((((.((------....)).))))..))(((((((((..(((((((..--((((.....))))..)).)))))..)))).)))))..... ( -35.90, z-score = -1.72, R) >droYak2.chr2R 17315201 101 - 21139217 --------AGGGGGUGGGGGGAGGCGCUUUCAAAGGGGGCGUCUAAAUGGUAGGGGCGUGGCAGCGUGA--UGGGGUCAGCCCGAAGCUGCUGCUGCGUCGCUUAUAAAUG --------.............(((((((..(...)..))))))).....(((((((((..(((((((..--((((.....))))..)).)))))..)))).)))))..... ( -42.90, z-score = -3.06, R) >droEre2.scaffold_4845 15620894 108 - 22589142 AGGGGGUGAUAGGGGGGCGGGUGGCGCUCUUCA-GGGGGCGUCUAAAUGGAAGGGGCGUGGCAGCGUGA--UGGGGUCAGCCCGAAGCUGCUGCUGCGUCGCUUAUAAAUG .(((.((..(.((((((((.....)))))))).-.)..)).)))......(((.((((..(((((((..--((((.....))))..)).)))))..)))).)))....... ( -43.90, z-score = -1.87, R) >droWil1.scaffold_180703 3113288 98 - 3946847 -----------GGGUGAUGCGAACGGACUCAUAUGUAUACAUAGAGAUGGUCAGAGAGAGAAAGAGAGAAUUGUGGCCUGCG-GGGUUUGCUGA-GCGUCGCUUAUAAAUG -----------(((((((((..((((((((.((((....)))).....(((((.((..............)).)))))....-))))))).)..-)))))))))....... ( -25.74, z-score = -1.42, R) >consensus ___________GGGUGGCGGGUGGCGCUUCAUA_GGGGGCGUCUAAAUGGUAGGGGCGUGGCAGCGUGA__UGGGGUCAGCCCGAAGCUGCUGCUGCGUCGCUUAUAAAUG .................................................((((((((((((((((((....((((.....))))..)).))))))))))).)))))..... (-20.56 = -21.60 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:37 2011