| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,278,596 – 17,278,705 |
| Length | 109 |
| Max. P | 0.763945 |
| Location | 17,278,596 – 17,278,705 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.21 |
| Shannon entropy | 0.45218 |
| G+C content | 0.35296 |
| Mean single sequence MFE | -23.43 |
| Consensus MFE | -12.15 |
| Energy contribution | -12.80 |
| Covariance contribution | 0.65 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.763945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17278596 109 + 23011544 ---------UCAUUUCAAACGCAUUCCUUUUUGCACUUCAAUUUUCUAGUAAAUGAAUUGUAGAUUAAAGGAAUGUCAACAUUCUUUGGG-UUUAUAUUUCAUAUCGUGGGGCCUAAGG- ---------...........(((((((((((((((.((((.(((......))))))).))))))...))))))))).......(((((((-(((...............))))))))))- ( -23.96, z-score = -2.25, R) >droAna3.scaffold_12916 12597290 109 - 16180835 UAAGUCUAAAAAUCCCCACCAUUUUCUCUACAUGGUUCAAAUUUUCUAGUAAAUGAAUUGAAGACUUAA--AAUGUCAACAUCAUUUGGG-UUCAUAUCCUGUUUUCUCUAG-------- (((((((..........(((((.........)))))((((...(((........))))))))))))))(--((((.......)))))(((-(....))))............-------- ( -14.60, z-score = -0.30, R) >droEre2.scaffold_4845 15615786 110 - 22589142 ---------UGACUUCAAACGCAUAUCCCCUUGCACUUCAAUUUUGCAGUACAUGAAUGGUAUAUUAGAGGAAUGUCAACAUUCCUUGGGACUUAAAUUUCAUAUCGCGGGACGGGAAG- ---------................((((((((((((.((....)).)))..(((((...((..((.((((((((....))))))))..))..))...)))))...)))))..))))..- ( -26.30, z-score = -1.27, R) >droYak2.chr2R 17310409 111 - 21139217 ---------UAAUUUCAAACGCAUUCCCCUUUGCACUUCAAUUUUGUAGUAAAUGAAUUGUAGAUUAAAGGAAUGUCAACAUUCUUUGGGGCUUGUAUUUCAUAUCGCGGGACGGGAAGG ---------...((((....(((..((((((((((.((((.(((......))))))).))))))...((((((((....))))))))))))..)))........(((.....))))))). ( -25.20, z-score = -0.99, R) >droSec1.super_7 899954 109 + 3727775 ---------UAAUUUCAAACGCAUUCCCUUUUGCACUUCAAUUUUCUAGUAAAUGAAUUGUAGAUUAAAGGAAUGUCAACAUUCUUUGGG-UUUACAUUUCAUAUCGCGGGGCCUAAGG- ---------................((((...(((((..........)))..(((((.(((((((..((((((((....))))))))..)-)))))).)))))...)))))).......- ( -25.80, z-score = -2.71, R) >droSim1.chr2L 16974213 109 + 22036055 ---------UAAUUUCAAACGCAUUCCCUUUUUCACUUCAAUUUUCUAGUAAAUGAAUUGUAGAUUAAAGGAAUGUCAACAUUCUUUGGG-UUUACAUUUCAUAUCGCGGGGCCUAAGG- ---------...............((((......(((..........)))..(((((.(((((((..((((((((....))))))))..)-)))))).))))).....)))).......- ( -24.70, z-score = -2.77, R) >consensus _________UAAUUUCAAACGCAUUCCCUUUUGCACUUCAAUUUUCUAGUAAAUGAAUUGUAGAUUAAAGGAAUGUCAACAUUCUUUGGG_UUUAUAUUUCAUAUCGCGGGGCCUAAGG_ .........................((((.....(((..........)))..(((((.((((((...((((((((....))))))))....)))))).))))).....))))........ (-12.15 = -12.80 + 0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:36 2011