| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,267,723 – 17,267,778 |
| Length | 55 |
| Max. P | 0.737454 |
| Location | 17,267,723 – 17,267,778 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 76.22 |
| Shannon entropy | 0.39597 |
| G+C content | 0.39545 |
| Mean single sequence MFE | -11.44 |
| Consensus MFE | -7.14 |
| Energy contribution | -6.66 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.737454 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17267723 55 + 23011544 CUCAUUGUGGUUUUCACUUGGGG-----UGUAAGUGCAUAAAAGGUGAGUAAACUAAAUU .......((((((((((((...(-----(((....))))...))))))..)))))).... ( -12.90, z-score = -2.43, R) >droSim1.chr2L 16967738 54 + 22036055 CUCAUUGUGGUUUUCACUUGGGGGG---UGUAAGUGCAUAAAAGGUGAGUAAACUAA--- .......((((((((((((.....(---(((....))))...))))))..)))))).--- ( -11.60, z-score = -1.57, R) >droSec1.super_7 893566 53 + 3727775 CUCAUUGUGGUUUUCACUUGGGGG----UGUAAGUGCAUAAAAGGUGAGUAAACUAA--- .......((((((((((((....(----(((....))))...))))))..)))))).--- ( -12.20, z-score = -1.98, R) >droYak2.chr2R 17303534 56 - 21139217 CUUAUUGCGGUUG-CACUUGGGUUUAGGUGUGGGUGUAUAAAAAA-G-AUAAACUAAUU- .....((((.(..-((((((....))))))..).)))).......-.-...........- ( -11.90, z-score = -2.17, R) >droEre2.scaffold_4845 15609134 53 - 22589142 CUCAUUGUGGUUU-CACUUGGGGUUAGGUGCGGGUGUAGAAAAAAUG-GUACACU----- .(((((....(((-((((((.(......).)))))).)))...))))-)......----- ( -8.60, z-score = 0.22, R) >consensus CUCAUUGUGGUUUUCACUUGGGGG____UGUAAGUGCAUAAAAGGUGAGUAAACUAA___ ((((((........((((((.(......).)))))).......))))))........... ( -7.14 = -6.66 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:35 2011