| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,259,730 – 17,259,820 |
| Length | 90 |
| Max. P | 0.702429 |
| Location | 17,259,730 – 17,259,820 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 49.83 |
| Shannon entropy | 0.86788 |
| G+C content | 0.29704 |
| Mean single sequence MFE | -19.02 |
| Consensus MFE | -4.36 |
| Energy contribution | -4.25 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.23 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.702429 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17259730 90 - 23011544 ----------UUCGAAACUGAUUGGAA-U--AUUUCUUUAAACUGUUGAUUAACAAAGGCUUUGUUGAUCAUAUGAGAAUGUUCUUUAUAUAGGUUUGAGAGU-------- ----------((((((.(((...((((-(--(((.(((........((((((((((.....))))))))))...))))))))))).....))).))))))...-------- ( -20.30, z-score = -2.12, R) >droAna3.scaffold_12916 12584407 91 + 16180835 ----------UCUAGAGUGCA--GGGUUUCAAUUCAAUUUAAUUUCCGUAAGAGAUAAGCUUUGUUUUUAUUUGAAAUUAAAUAUGUGUUUAAACCUAAAGGC-------- ----------...........--((((((.(((.((((((((((((....(((((((.....)))))))....)))))))))).)).))).))))))......-------- ( -16.90, z-score = -1.20, R) >droEre2.scaffold_4845 15600917 75 + 22589142 ---------UUCCUAAACUGAUUAGAACU--AUUUGUUUAAAUUGGUGAUUAACAAAGGCUAUGUUGAUCAUAGGGGAAGGAUCUU------------------------- ---------((((((.((..(((.((((.--....)))).)))..))((((((((.......)))))))).)))))).........------------------------- ( -19.40, z-score = -2.83, R) >droSec1.super_7 885667 91 - 3727775 ----------UUCGAAACUGAUUGGAACU--GUUUGUGUAAUCUAAUGAUUAGCAAAGGCAUUGUUGAUCAUAUAAGAAUGAUCUUUAUGUAGUUUUGAGAGC-------- ----------(((((((((..........--.(((((.(((((....)))))))))).((((....((((((......))))))...)))))))))))))...-------- ( -22.20, z-score = -2.40, R) >droSim1.chr2L 16959809 91 - 22036055 ----------UUUGAAACUGAUUAGAACU--GUUUGUGUAAACUGAUGAUUAGCAAAGGCUUUGUUGAUCAUAUAAGAAUGAUCUUUAUGUAGUUUUGAGAGC-------- ----------((..((((((...(((((.--....)).....((.(((((((((((.....)))))))))))...)).....))).....))))))..))...-------- ( -19.20, z-score = -1.75, R) >droGri2.scaffold_15110 2599199 111 + 24565398 UGUGUAACACAUUGGUGUUUAAUAGUUUGGAGUACUAUUGAAAUUUUUAAAAUAACAAUCUUUUGAGUUUUUUGAAACAAAGAUAGAAAUUAAUGUCAAAGAUUUCGCAGG ..((((((((....))))).((((((.......))))))(((((((((..................((((....))))...((((........)))))))))))))))).. ( -16.10, z-score = 0.49, R) >consensus __________UUCGAAACUGAUUAGAACU__AUUUGUUUAAACUGAUGAUUAACAAAGGCUUUGUUGAUCAUAGAAGAAUGAUCUUUAUGUAGUUUUGAGAGC________ ..............................................(((((((((.......)))))))))........................................ ( -4.36 = -4.25 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:34 2011