| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,257,668 – 17,257,772 |
| Length | 104 |
| Max. P | 0.935542 |
| Location | 17,257,668 – 17,257,772 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 80.37 |
| Shannon entropy | 0.37843 |
| G+C content | 0.40763 |
| Mean single sequence MFE | -22.24 |
| Consensus MFE | -13.47 |
| Energy contribution | -15.08 |
| Covariance contribution | 1.61 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.935542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17257668 104 - 23011544 CUACUGCCACUUGCCAGACCGAAAAUUGAUUGAUUUUAUUUGCACG--AUGGGGGGAAAAGAAAACGUUAACCAACUCCUUCUAUGCGUUUUCUUCCCCCAAAAAU .......(((.(((.(((...((((((....)))))).)))))).)--.))((((((..(((((((((.................)))))))))))))))...... ( -25.43, z-score = -2.43, R) >droWil1.scaffold_180703 3086370 88 + 3946847 UUACUAGUACUUGCCAUAUUCGAAAUUGAUUGAUUUUAUUUGCAGAAAACUUCCCCUAACCCAGAUUGCUAUCCACUCCACUACAGAG------------------ ....((((..((((.(((.((((......))))...)))..))))..................(((....)))......)))).....------------------ ( -4.50, z-score = 1.01, R) >droEre2.scaffold_4845 15598922 106 + 22589142 CUACUGCCACUUGCCAGACCGAAAAUUGAUUGAUUUUAUUUGCACGAAAUGGGGGAAAAAGAAAACGUUAACCAACUCCUUCUCUGCGUUUUCUUCCCCCAAAAAU .........(.(((.(((...((((((....)))))).)))))).)...(((((((...(((((((((.................))))))))))))))))..... ( -25.53, z-score = -2.96, R) >droYak2.chr2R 17292313 106 + 21139217 CUACUGCCACUUGCCAGACCGAAAAUUGAUUGAUUUUAUUUGCACGAAAUGGGGGAAAAAGAAAACGUUAACCAACUCCUUCUCUGCGUUUUCUUCCCCCGAAAAU .........(.(((.(((...((((((....)))))).)))))).)...(((((((...(((((((((.................))))))))))))))))..... ( -24.83, z-score = -2.57, R) >droSec1.super_7 883555 104 - 3727775 CUACUGCCACUUGCCAGACCGAAAAUUGAUUGAUUUUAUUUGCACG--AUUGGGGGAAAAGAAAACGUUAACCAACUCCUUCUCUGCGUUUUCUUCCCCCAAAAAU .........(.(((.(((...((((((....)))))).)))))).)--.((((((((..(((((((((.................))))))))))))))))).... ( -26.83, z-score = -3.42, R) >droSim1.chr2L 16957649 104 - 22036055 CUACUGCCACUUGCCAGACCGAAAAUUGAUUGAUUUUAUUUGCACG--AUUGGGGGGAAAGAAAACGUUAACCAACUCCUUCUCUGCGUUUUCUUCCCCCAAAAAU ......(((.(((.((((...((((((....)))))).))))..))--).)))((((.((((((((((.................)))))))))).))))...... ( -26.33, z-score = -2.58, R) >consensus CUACUGCCACUUGCCAGACCGAAAAUUGAUUGAUUUUAUUUGCACG__AUGGGGGGAAAAGAAAACGUUAACCAACUCCUUCUCUGCGUUUUCUUCCCCCAAAAAU ...........(((.(((...((((((....)))))).)))))).......((((...((((((((((.................)))))))))).))))...... (-13.47 = -15.08 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:33 2011