| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,687,171 – 1,687,267 |
| Length | 96 |
| Max. P | 0.953670 |
| Location | 1,687,171 – 1,687,267 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.16 |
| Shannon entropy | 0.35958 |
| G+C content | 0.53184 |
| Mean single sequence MFE | -29.99 |
| Consensus MFE | -21.78 |
| Energy contribution | -23.06 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.953670 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1687171 96 - 23011544 -UUUUCAUUUCGAGCUGAUGGCGCUGA---CAGCUCUCGAACCAGAGAUCUUGGCAGGG-AACUCCCAUCCUGCCCC------------AUCC-------CCAUCGCCAUCGGCCACAAG -..........(.((((((((((.((.---.((.((((......)))).)).(((((((-........)))))))..------------....-------.)).)))))))))))..... ( -36.20, z-score = -3.77, R) >droEre2.scaffold_4929 1730752 102 - 26641161 -CUUUUAUCUCGAGCUGAUGGCUGUGA---CAGCUCUUGAACCAGAGAUUUCGGCCGGG-AACUCCCAUCCAUCCC-------------AUCCUUUCCUAUCCUCGCCAUCGGCCAUAAU -..........(.(((((((((...((---...((((......))))...))((..(((-....)))..)).....-------------................))))))))))..... ( -28.30, z-score = -1.66, R) >droYak2.chr2L 1657716 120 - 22324452 CUUUUUAUUUCCAGUUGAUGGCCGUGACAGCAGCUCUUGAACCAGAGAUCUUGGCAGGGAAACUGCCAUCCUCUCCCCUCAUAUCCUAUAUCCUUUGCUAUCCUCGCCAUCGGCCAUAAU .............(((((((((...((.(((((....(((....((((...((((((.....))))))...))))...))).............))))).))...)))))))))...... ( -32.93, z-score = -2.19, R) >droSec1.super_14 1621973 96 - 2068291 -UUUUCAUUUCGAGCUGAUGGCGCUGA---CAGCUCUCGAACCAGAGAUCUUGGCAGGG-CACUCCCAUCCUGAACC------------AUCC-------CCAACACCAUUGGCCAUAAG -..........(.((..((((.(.((.---.((.((((......)))).))((((((((-........)))))..))------------)...-------.)).).))))..)))..... ( -24.10, z-score = -0.69, R) >droSim1.chr2L 1628612 96 - 22036055 -UUUUCAUUCCGAGCUGAUGGCGCUGA---CAGCUCUCGAACCAGAGAUCUUGGCAGGG-AACUCCCAUCCUGCCCC------------AUGC-------CCAACACCAUUGGCCAUAAG -..........(.((..((((.(.((.---.((.((((......)))).)).(((((((-........)))))))..------------....-------.)).).))))..)))..... ( -28.40, z-score = -1.60, R) >consensus _UUUUCAUUUCGAGCUGAUGGCGCUGA___CAGCUCUCGAACCAGAGAUCUUGGCAGGG_AACUCCCAUCCUGCCCC____________AUCC_______CCAUCGCCAUCGGCCAUAAG .............((((((((((.((.....((.((((......)))).)).(((((((.........)))))))..........................)).))))))))))...... (-21.78 = -23.06 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:54 2011