Locus 2239

Sequence ID dm3.chr2L
Location 17,234,873 – 17,234,942
Length 69
Max. P 0.998773
window3088

overview

Window 8

Location 17,234,873 – 17,234,942
Length 69
Sequences 5
Columns 69
Reading direction reverse
Mean pairwise identity 98.26
Shannon entropy 0.02814
G+C content 0.32174
Mean single sequence MFE -19.16
Consensus MFE -19.40
Energy contribution -19.16
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -4.89
Structure conservation index 1.01
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 3.48
SVM RNA-class probability 0.998773
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 17234873 69 - 23011544
GUUGCACUUUUCUCAGUUGCAAUAUUUUUCUAUCCUUUUGUAAAAGUGUUGCACACUUUUUAGUGUAAA
.(((((((......(((((((((((((((.((......)).)))))))))))).)))....))))))). ( -19.10, z-score =  -4.93, R)
>droSim1.chr2L 16932412 69 - 22036055
GUUGCACUUUUCCCAGUUGCAAUAUUUUUCUAUCCUUUUGUAAGAGUGUUGCACACUUUUUAGUGUAAA
.(((((((......(((((((((((((((.((......)).)))))))))))).)))....))))))). ( -19.20, z-score =  -4.86, R)
>droSec1.super_7 861232 69 - 3727775
GUUGCACUUUUCCCAGUUGCAAUAUUUUUCUAUCCUUUUGUAAGAGUGUUGCACACUUUUUAGUGUAAA
.(((((((......(((((((((((((((.((......)).)))))))))))).)))....))))))). ( -19.20, z-score =  -4.86, R)
>droYak2.chr2R 17269668 69 + 21139217
GUUGCACUUUUCUCAGUUGCAAUAUUUUUCUAUCCUUUUGUAAAAGUGUUGCACACUUUUUAGUGUAAA
.(((((((......(((((((((((((((.((......)).)))))))))))).)))....))))))). ( -19.10, z-score =  -4.93, R)
>droEre2.scaffold_4845 15577051 69 + 22589142
GUUGCACUUUUCCCAGUUGCAAUAUUUUUCUAUCCUUUUGUAAGAGUGUUGCACACUUUUUAGUGUAAA
.(((((((......(((((((((((((((.((......)).)))))))))))).)))....))))))). ( -19.20, z-score =  -4.86, R)
>consensus
GUUGCACUUUUCCCAGUUGCAAUAUUUUUCUAUCCUUUUGUAAGAGUGUUGCACACUUUUUAGUGUAAA
.(((((((......(((((((((((((((.((......)).)))))))))))).)))....))))))). (-19.40 = -19.16 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:31 2011