| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,227,598 – 17,227,652 |
| Length | 54 |
| Max. P | 0.589146 |
| Location | 17,227,598 – 17,227,652 |
|---|---|
| Length | 54 |
| Sequences | 6 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 63.70 |
| Shannon entropy | 0.65481 |
| G+C content | 0.40427 |
| Mean single sequence MFE | -11.62 |
| Consensus MFE | -5.57 |
| Energy contribution | -4.05 |
| Covariance contribution | -1.52 |
| Combinations/Pair | 1.87 |
| Mean z-score | -0.72 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.589146 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17227598 54 + 23011544 UCUUAGUUAUAGUGAAUGCUGUCACUGAGAGAUUUUCUUUUCUUAAUCAGGAAA----- (((((((.(((((....))))).)))))))........((((((....))))))----- ( -13.10, z-score = -1.69, R) >droYak2.chr2R 17262389 54 - 21139217 UAUUAGUUAAAGUACGCGCUUUCACUGAGGGAUUUCCUUUUCCAAAUCGGGAAA----- ..(((((.(((((....))))).)))))(((....)))(((((.....))))).----- ( -11.80, z-score = -1.19, R) >droEre2.scaffold_4845 15569854 54 - 22589142 UCCUAGUUAAAGUAAACGCUCUCACUGGGGCAGUUUGUUUCCUAAAUCCGGGAA----- (((((((.(.(((....))).).)))))))........(((((......)))))----- ( -11.40, z-score = -0.33, R) >droAna3.scaffold_12916 12556156 59 - 16180835 UUUUAAUUAAAGUCUGAGUUGUCAUUGAGGGAUUUGCGUUUCGAAAAGGAGAACCAGAA ............((((.(((.((.....(..((....))..)......)).))))))). ( -11.00, z-score = -0.65, R) >dp4.chr4_group4 6458577 51 - 6586962 UCUUAAUUAAAAUCCAAGCUGUCGGGAAGGGA-UUUGCUCUC--ACUCCGAGAG----- .........((((((...((....))...)))-))).(((((--.....)))))----- ( -11.20, z-score = -0.44, R) >droPer1.super_68 311405 51 + 338515 UCUUAAUUAAAGUCCAAGCUGUCGGGAAGGGA-UUUGCUCUC--ACUCCGAGAG----- .........((((((...((....))...)))-))).(((((--.....)))))----- ( -11.20, z-score = -0.04, R) >consensus UCUUAAUUAAAGUCCAAGCUGUCACUGAGGGAUUUUCUUUUC_AAAUCCGGAAA_____ (((((((...(((....)))...))))))).......(((((.......)))))..... ( -5.57 = -4.05 + -1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:28 2011