| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,213,330 – 17,213,444 |
| Length | 114 |
| Max. P | 0.653234 |
| Location | 17,213,330 – 17,213,444 |
|---|---|
| Length | 114 |
| Sequences | 11 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 80.56 |
| Shannon entropy | 0.41752 |
| G+C content | 0.43904 |
| Mean single sequence MFE | -16.68 |
| Consensus MFE | -12.59 |
| Energy contribution | -12.77 |
| Covariance contribution | 0.18 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.653234 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17213330 114 + 23011544 AAAAAAGGCAACUCAAGUGCGC-AGCCCUUAAAUGAGGAAAGUUUAAUGCUUUCAUAAGCACAACAAAUCCUAAAACAAACCCCUCU---AACCCGCUUUUAACUCCUCCUACCACCA ...((((((.....(((.((..-.)).))).....((((..(((...(((((....))))).)))...))))...............---.....))))))................. ( -14.60, z-score = -0.58, R) >droSec1.super_7 839710 114 + 3727775 AAAAAAGGCAACUCAAGUGCGC-AGCCCUUAAAUGAGGAAAGUUUAAUGCUUUCAUAAGCACAACAAAUCCUAAAACAAACCCCUCU---AACCCGCUUUUAACCCCUCCUACCACCA ...((((((.....(((.((..-.)).))).....((((..(((...(((((....))))).)))...))))...............---.....))))))................. ( -14.60, z-score = -0.68, R) >droSim1.chr2L 16910632 114 + 22036055 AAAAAAGGCAACUCAAGUGCGC-AGCCCUUAAAUGAGGAAAGUUUAAUGCUUUCAUAAGCACAACAAAUCCUAAAACAAACCCCUCU---AACCCGCUUUUAACCCCUCCCACCACCA ...((((((.....(((.((..-.)).))).....((((..(((...(((((....))))).)))...))))...............---.....))))))................. ( -14.60, z-score = -0.76, R) >droYak2.chr2R 17247990 114 - 21139217 AAAAAAGGCAACUCAAGUGCGC-AGCCCUUAAAUGAGGAAAGUUUAAUGCUUUCAUAAGCACAACAAAUCCUAAAACAAACCCCUCU---AACCCGCUUUUAACCCCUCCCACCACCA ...((((((.....(((.((..-.)).))).....((((..(((...(((((....))))).)))...))))...............---.....))))))................. ( -14.60, z-score = -0.76, R) >droEre2.scaffold_4845 15556133 112 - 22589142 AAAAAAGGCAACUCAAGUGCGC-AGCCCUUAAAUGAGGAAAGUUUAAUGCUUUCAUAAGCACAACAAAUCCUAAAACAAACCCCUCU---AACCCGCCCUUAACCCCUCCUACCAC-- .....(((......(((.(((.-...((((....))))...(((...(((((....))))).)))......................---....))).))).......))).....-- ( -13.92, z-score = -0.73, R) >droAna3.scaffold_12916 12543154 101 - 16180835 AAAAAAGGCAGCUGAAGUGCGC-AGCCCUUAAAUGAGGAAAGUUUAAUGCUUUCAUAAGCACAACAAAUCCUAAAACAAGCUCCGCCG--AGCCCCCACCA--CCA------------ ......((..(((...(.(((.-(((((((....))))...(((...(((((....))))).)))..............))).)))).--)))..))....--...------------ ( -21.10, z-score = -1.30, R) >dp4.chr4_group4 109122 109 + 6586962 AAAAAAGGCAACUCAAGUGCGCCAGCCCUUAAAUGAGGAAAGUUUAAUGCUUUCAUAAGCACAACAAAUCCUAAAACAAACCUCUCCCCUGGACC---------CCCGUCCACCCCCA .....((....))...((((.......(((....)))((((((.....))))))....))))...........................(((((.---------...)))))...... ( -19.20, z-score = -1.69, R) >droPer1.super_68 7867 118 - 338515 AAAAAAGGCAACUCAAGUGCGCCAGCCCUUAAAUGAGGAAAGUUUAAUGCUUUCAUAAGCACAACAAAUCCUAAAACAAACCUCUCCCCUGGACCGCCCGGACCCCCGUCCACCCCCA ......(((.......((((.......(((....)))((((((.....))))))....))))..................((........))...))).((((....))))....... ( -24.10, z-score = -2.04, R) >droWil1.scaffold_180703 3034678 96 - 3946847 AAAAAAGGCAACUCAAGUGCGCACAGCCUUAAAUGAGGAAAGUUUAAUGCUUUCAUAAGCACAACAAAUCCUAAGACAAACCCCUCCCCAAAAAGA---------------------- .....((....))...((((.......(((....)))((((((.....))))))....))))..................................---------------------- ( -13.80, z-score = -0.54, R) >droVir3.scaffold_13246 1867182 86 - 2672878 AAAAAAGGCAACUCAAGUGCGC-UGCC-UUAAAUGAGGAAAGUUUAAUGCUUUCAUAAGCACAACAAAUCCUAAGACAAGCCCCGACA------------------------------ ......(((.......((((..-...(-((....)))((((((.....))))))....))))......((....))...)))......------------------------------ ( -15.60, z-score = -0.56, R) >droGri2.scaffold_15252 16421550 108 + 17193109 AAAAAAGGCAACUCAAGUGCGC-UGCC-UUAAAUGAGGAAAGUUUAAUGCUUUCAUAAGCACAACAAAUCCUAAGACAAACCCCACCC--ACCCCUCAACAGACCGCCGCCA------ ....((((((.(.(....).).-))))-))...(((((...(((...(((((....))))).)))...((....))............--...)))))..............------ ( -17.40, z-score = -0.88, R) >consensus AAAAAAGGCAACUCAAGUGCGC_AGCCCUUAAAUGAGGAAAGUUUAAUGCUUUCAUAAGCACAACAAAUCCUAAAACAAACCCCUCC___AACCCGCUUUUAACCCCUCCCACCACCA .....((....))...((((.......(((....)))((((((.....))))))....))))........................................................ (-12.59 = -12.77 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:24 2011