| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,198,754 – 17,198,866 |
| Length | 112 |
| Max. P | 0.568439 |
| Location | 17,198,754 – 17,198,866 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 81.40 |
| Shannon entropy | 0.36020 |
| G+C content | 0.46587 |
| Mean single sequence MFE | -28.82 |
| Consensus MFE | -19.08 |
| Energy contribution | -19.97 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568439 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17198754 112 - 23011544 UUUCUCCUUCGUCUUGCCACUCUUUCUCUCCAAAGCAGAAUGUCAUUUGUUGCAACUUUUCCUGCAAAUUGUGGCAAAGUACUUGCUGCAAGUGGCUGCUUUAAGUACUCUG .............(((((((...((((((....)).)))).........(((((........)))))...)))))))((((((((..(((......)))..))))))))... ( -27.30, z-score = -2.15, R) >droSim1.chr2L 16897628 112 - 22036055 UUUCCCCUUCGUCUUGCCGCUCUUUCUCCGCAAAGCUGAAUGUCAUUUGUUGCAACUUUUCCUGCAAAUUGUGGCAAAGUACUUGCUGCAAGUGGCUGCUUUAAGUACUCCG .......((((..((((.(........).))))..).)))((((((...(((((........)))))...)))))).((((((((..(((......)))..))))))))... ( -27.60, z-score = -1.93, R) >droSec1.super_7 826737 112 - 3727775 UUUCCCCUUCGUCUUGCCGCUCUUUCUCCGCAAAGCUGAAUGUCAUUUGUUGCAACUUUUCCUGCAAGUUGUGGCAAAGUACUUGCUGCAAGUGGCUGCUUUAAGUACUUCG .......((((..((((.(........).))))..).))).....(((((..((((((.......))))))..)))))(((((((..(((......)))..))))))).... ( -28.30, z-score = -1.62, R) >droYak2.chr2R 17234756 111 + 21139217 -UUCUCCUUCGGGUUGCCGCUCUUUUUCCUCCAAGCUGAGUGUCAUUUGUUGCAACUUUUCCUGCAAAUUGUGGCAAAGUACUUGCUGCAAGUGGCUGCUUUAAGUACUCGG -....((....))(((((((........(((......))).........(((((........)))))...)))))))((((((((..(((......)))..))))))))... ( -30.00, z-score = -1.22, R) >droEre2.scaffold_4845 15543104 111 + 22589142 -UUCUCCUUCGGGUUGCCGCCCUUCCUUCGCAAAGCUGAAUGGCAUUUGUUGCAACUUUUCCUGCAAAUUGUGGCAAAGUACUUGCUGCAAGUGGCUGCUUUAAGUACUCGG -....((....))(((((((.........((((((((....))).)))))((((........))))....)))))))((((((((..(((......)))..))))))))... ( -33.10, z-score = -1.19, R) >droAna3.scaffold_12916 12531003 89 + 16180835 ---------------GUGAGUCCCUUCCUGCC--------UGUCACUUGGCGAAACUUUUGCAGCAAAUUGUGGCAAGGUACUUGCUGCAAGUGGCUGGUUAAAGUACUGUU ---------------...(((.......((((--------........))))..(((((..((((...(((..(((((...)))))..)))...))))...))))))))... ( -26.60, z-score = -0.49, R) >consensus _UUCUCCUUCGUCUUGCCGCUCUUUCUCCGCAAAGCUGAAUGUCAUUUGUUGCAACUUUUCCUGCAAAUUGUGGCAAAGUACUUGCUGCAAGUGGCUGCUUUAAGUACUCCG ........................................((((((...(((((........)))))...)))))).((((((((..(((......)))..))))))))... (-19.08 = -19.97 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:23 2011