| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,151,483 – 17,151,566 |
| Length | 83 |
| Max. P | 0.539383 |
| Location | 17,151,483 – 17,151,566 |
|---|---|
| Length | 83 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 56.49 |
| Shannon entropy | 0.57008 |
| G+C content | 0.51509 |
| Mean single sequence MFE | -18.52 |
| Consensus MFE | -8.93 |
| Energy contribution | -9.60 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.539383 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17151483 83 + 23011544 -CGCAAGUUCCACUUGCAUCAGGGUUCUCGGCACUCGCUGCCGCAUACCUCACCUUGAUAUGACAACCAACAUGCUGUGGUUCU---------- -.(((((.....)))))((((((((...(((((.....)))))........)))))))).....(((((........)))))..---------- ( -24.20, z-score = -1.89, R) >droSim1.chrU 10347172 84 - 15797150 GCGAGGCUACUUCUCGCUCUACUACUA-CGGCUCUCGUAGCCGCACAGCUCACCU---------AAUCAAUAUGAUAAGCAUUCCUAGGGUUCU ((((((.....))))))..........-(((((.....))))).........(((---------(......(((.....)))...))))..... ( -16.90, z-score = 0.01, R) >droSec1.super_86 73009 66 + 128402 GCGAGGCUACUUCUCGCUCUACUACUA-CGGCUCUCGUAGCCGCACAGCUCACUU---------AAUCAAUAUGCU------------------ ((((((.....))))))..........-(((((.....)))))...(((......---------.........)))------------------ ( -14.46, z-score = -1.27, R) >consensus GCGAGGCUACUUCUCGCUCUACUACUA_CGGCUCUCGUAGCCGCACAGCUCACCU_________AAUCAAUAUGCU__G__U____________ ((((((.....))))))...........(((((.....)))))................................................... ( -8.93 = -9.60 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:21 2011