| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,677,225 – 1,677,298 |
| Length | 73 |
| Max. P | 0.968609 |
| Location | 1,677,225 – 1,677,298 |
|---|---|
| Length | 73 |
| Sequences | 6 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 78.18 |
| Shannon entropy | 0.41813 |
| G+C content | 0.55515 |
| Mean single sequence MFE | -20.17 |
| Consensus MFE | -11.36 |
| Energy contribution | -12.25 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.968609 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1677225 73 + 23011544 GGUCAAUUCUUCUAUUGCCCACCUGCAGCUGUCAGGAUGAAGCCUCCAGGCUUCCC--ACUCCUC-GCAGCUUUCG ((.((((......)))).))......((((((.((((.((((((....))))))..--..)))).-)))))).... ( -26.50, z-score = -4.24, R) >droAna3.scaffold_12916 15083248 65 + 16180835 GGUCAAUUCUUCUAUUGCCCACCUGCAGCUGUCAACCUUAACAGCCUAUCCUUGUUCGAACUUCG----------- ((.((((......)))).)).......(((((........)))))....................----------- ( -9.50, z-score = -1.63, R) >droEre2.scaffold_4929 1728150 73 + 26641161 GGUCACCUCUUCAAUUGCCCACCUGCAGCUGUCAGGAUGAAGCCACCAGGCCUCCC--ACUCCUG-GCUACUUUCG ..............((((......))))..(((((((.((.(((....))).))..--..)))))-))........ ( -16.80, z-score = -0.13, R) >droYak2.chr2L 1655064 76 + 22324452 GGUCACUUCUUCAAUUGCCCACCUGCAGCUGUCAGGUUGAAGCCACCCGGUUUACCCAACCCCUCUGCAACUUUCG ((.((..........)).))...(((((......((((((((((....)))))...)))))...)))))....... ( -14.60, z-score = -0.48, R) >droSec1.super_14 1619423 73 + 2068291 GGUCAAUUCUUCUAUUGCCCACCUGCAGCUGUCAGGAUGAAGCCGCCAGGCUUCCC--ACUCCUC-GCAGCUUUCG ((.((((......)))).))......((((((.((((.((((((....))))))..--..)))).-)))))).... ( -27.00, z-score = -3.93, R) >droSim1.chr2L 1626081 73 + 22036055 GGUCAAUUCUUCUAUUGCCCACCUGCAGCUGUCAGGAUGAAGCCUCCGGGCUUCCC--ACUCCUC-GCAGCUUUCG ((.((((......)))).))......((((((.((((.((((((....))))))..--..)))).-)))))).... ( -26.60, z-score = -3.77, R) >consensus GGUCAAUUCUUCUAUUGCCCACCUGCAGCUGUCAGGAUGAAGCCACCAGGCUUCCC__ACUCCUC_GCAGCUUUCG ((.((((......)))).)).(((((....).))))..((((((....))))))...................... (-11.36 = -12.25 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:54 2011