| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,132,928 – 17,133,015 |
| Length | 87 |
| Max. P | 0.656678 |
| Location | 17,132,928 – 17,133,015 |
|---|---|
| Length | 87 |
| Sequences | 5 |
| Columns | 87 |
| Reading direction | reverse |
| Mean pairwise identity | 78.02 |
| Shannon entropy | 0.35956 |
| G+C content | 0.40396 |
| Mean single sequence MFE | -19.90 |
| Consensus MFE | -12.48 |
| Energy contribution | -13.64 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.656678 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17132928 87 - 23011544 UUCAAGUGCCUAACCACGAUACUUAUUUAUAAUCCAAACUAAGCACGCGCAGCUAGCUGUGCAAUUAUCAUAAGCUAGUUAGGCGCU ....((((((((((.......((((.((........)).))))...((((((....))))))...............)))))))))) ( -25.00, z-score = -2.79, R) >droSim1.chr2L 16838040 87 - 22036055 UUCAAGUGCCUGACCACAAUACCGAUUUAUAAUCCAAGCUAAGCACGCGCAGCUAGCUGUGCAAUUAUCAUAAGCUGGUUAGGCGCU ....(((((((((((((....................((...))..((((((....))))))...........).)))))))))))) ( -30.10, z-score = -3.30, R) >droSec1.super_7 769215 73 - 3727775 UUCAAGUGCCUGACCACAAUACCGAUUUAUAAUCCA--------------AGCUAGCUGUGCAAUUAUCAUAAGCUGGUUAGGCGCU ....(((((((((((........(((.....)))..--------------....(((((((.......))).))))))))))))))) ( -22.10, z-score = -2.93, R) >droYak2.chr2R 17175152 71 + 21139217 GUUAGGUGCCUUAUCAUUAUACUGAUUUAUAAUCGA--------------AGCUAGAUGUGCAAUUAUCAUAAACUGGUUAAGCG-- (((.(((.....((((......)))).....)))..--------------((((((.((((.......))))..)))))).))).-- ( -8.60, z-score = 1.07, R) >droEre2.scaffold_4845 15485997 73 + 22589142 GUCAAGUGCCUAAGCAUUAUACAGAUUUAUAAUCCC--------------AGCUAGAUGUGCAAUUAUCAUAAACUGGUUGAGCGCU ....(((((......((((((......))))))..(--------------((((((.((((.......))))..))))))).))))) ( -13.70, z-score = -0.23, R) >consensus UUCAAGUGCCUAACCACAAUACCGAUUUAUAAUCCA______________AGCUAGCUGUGCAAUUAUCAUAAGCUGGUUAGGCGCU ....((((((((((((.......(((.....))).................((.......)).............)))))))))))) (-12.48 = -13.64 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:20 2011