| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,125,130 – 17,125,225 |
| Length | 95 |
| Max. P | 0.697939 |
| Location | 17,125,130 – 17,125,225 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 64.73 |
| Shannon entropy | 0.66302 |
| G+C content | 0.38914 |
| Mean single sequence MFE | -19.70 |
| Consensus MFE | -7.81 |
| Energy contribution | -9.12 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.697939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17125130 95 - 23011544 ------AUAUUUUAACACCACUUCGGAUUCUGAUUCAAAAAAAGGGUUAACUAGUAUUUUAUCGGAAUUCGAAACUGAAAAAGAGUUU---ACUGUAUCGGACC ------...............(((((((((((((........((......))........))))))))))))).((((...((.....---.))...))))... ( -18.69, z-score = -1.04, R) >droEre2.scaffold_4845 15478276 101 + 22589142 ACAUCACCAUCAACACAACAUUUCGGAUUCUGAUUCAAAAAAAGCGUUAACUAGUAUUCCUUCGGAUUCUAAUACUGAAACAGAGUCU---ACUUUAUCGGAAU ........................((((((((.((((......((........))....(....)..........)))).))))))))---............. ( -13.90, z-score = -0.52, R) >droYak2.chr2R 17166422 101 + 21139217 ACAUCACCAGCAAUACACUAUUUCUGAUUCUGAUUCAAAAAAAGCGUUAACUAGUAUUUAUUCGGAAACUGAUUCCGAAACGGAGUCA---ACUGUAUCGGAAC .......(((.((((...)))).))).(((((((.((..........................(....)((((((((...))))))))---..)).))))))). ( -19.60, z-score = -1.45, R) >droSec1.super_7 756825 95 - 3727775 ------ACGUUUUAACACCCCUUCGGAUUCUGAUUCAAAAAGAGCGUUAACUAGUAUUUUAUCGGAAUCCGAUACUGAAAUAGAGCUU---ACUGUAUCGGACC ------................((((((((((((....((((.((........)).))))))))))))))))..((((.((((.....---.)))).))))... ( -23.40, z-score = -2.32, R) >droSim1.chr2L 16829787 95 - 22036055 ------GCGUUUUAAUACCCCUUCGGAUUCCGAUUCAAAAAAAGCGUUAACUAGUAUUUUAUCGGAAUCCGAUACUGAAAUGGAGCUU---ACUGUAUCGGACC ------................((((((((((((....((((.((........)).))))))))))))))))..((((.((((.....---.)))).))))... ( -24.60, z-score = -2.39, R) >droAna3.scaffold_12916 12453999 81 + 16180835 ------------------CGAUUUCAUCAAAGAGCUCAAAACGGCCUUCACCCGCUUCGCGUAAG-----GAUACUGAGGAGGAGCUUCCAAGUAUAGCCGAGU ------------------.((.(((......))).))....((((.....(((((...)))...)-----)(((((..((((....)))).))))).))))... ( -18.00, z-score = 0.39, R) >consensus ______ACAUUUUAACACCACUUCGGAUUCUGAUUCAAAAAAAGCGUUAACUAGUAUUUUAUCGGAAUCCGAUACUGAAAAAGAGCUU___ACUGUAUCGGACC ......................(((((((((((.........((......)).........)))))))))))................................ ( -7.81 = -9.12 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:19 2011