| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,103,306 – 17,103,409 |
| Length | 103 |
| Max. P | 0.846613 |
| Location | 17,103,306 – 17,103,409 |
|---|---|
| Length | 103 |
| Sequences | 10 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.36 |
| Shannon entropy | 0.29455 |
| G+C content | 0.41619 |
| Mean single sequence MFE | -23.42 |
| Consensus MFE | -15.80 |
| Energy contribution | -16.51 |
| Covariance contribution | 0.71 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.846613 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17103306 103 - 23011544 --------------AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCGU---CAGAACACAC --------------(((((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).))))))).....---.......... ( -23.90, z-score = -2.42, R) >droPer1.super_8 1318731 120 + 3966273 UCUGCCACCGCGCCGUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACAGGGUACAGAGCACAC ((((..(((.(....((((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).))))))....)))).))))...... ( -29.80, z-score = -1.08, R) >droAna3.scaffold_12916 12433854 103 + 16180835 --------------AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCGG---CAGAGCACAC --------------...(((.((((((...((((((...((((((((((...(((((....))))).....))))))))))))))))..((.((....))))..)))---)))))).... ( -25.30, z-score = -2.29, R) >droEre2.scaffold_4845 15455587 103 + 22589142 --------------AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCGU---CAGAACACAC --------------(((((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).))))))).....---.......... ( -23.90, z-score = -2.42, R) >droYak2.chr2R 17143167 103 + 21139217 --------------AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCGU---CAGAAUACAC --------------(((((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).))))))).....---.......... ( -23.90, z-score = -2.39, R) >droSec1.super_7 734967 103 - 3727775 --------------AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCGU---CAGAACACAC --------------(((((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).))))))).....---.......... ( -23.90, z-score = -2.42, R) >droSim1.chr2L 16788067 103 - 22036055 --------------AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCGU---CAGAACACAC --------------(((((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).))))))).....---.......... ( -23.90, z-score = -2.42, R) >droWil1.scaffold_180703 2908598 97 + 3946847 --------------GCUGCUCCUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGGG-------GAAUGCAC-- --------------((..((((((.(((..((((((...((((((((((...(((((....))))).....))))))))))))))))....)))....)))))-------)...))..-- ( -26.00, z-score = -2.17, R) >droVir3.scaffold_13246 1769801 85 + 2672878 ----------------------------AUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGGC-------CAAAAAACGC ----------------------------..((((((...((((((((((...(((((....))))).....))))))))))))))))....(((((.......-------.....))))) ( -16.50, z-score = -1.70, R) >droMoj3.scaffold_6500 5018917 81 - 32352404 --------------------GCUGGUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGG------------------- --------------------((..(((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)))))........------------------- ( -17.10, z-score = -1.57, R) >consensus ______________AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCGU___CAGAACACAC ...................(((((.(((..((((((...((((((((((...(((((....))))).....))))))))))))))))....)))....)))))................. (-15.80 = -16.51 + 0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:16 2011