| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,102,423 – 17,102,523 |
| Length | 100 |
| Max. P | 0.617985 |
| Location | 17,102,423 – 17,102,523 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 77.16 |
| Shannon entropy | 0.44322 |
| G+C content | 0.47416 |
| Mean single sequence MFE | -30.02 |
| Consensus MFE | -20.19 |
| Energy contribution | -19.67 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.617985 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17102423 100 - 23011544 UCCGACUUUGUGAGCACAUUUCGGAUUUUAAACUUCGACUUUCCU---UUAGUCUCGAUUGGAGUGUCGAUUGGGCUUAUUCGAGGCUGAUUUAAGCGGCCUU----- (((((...(((....)))..))))).........(((.(((....---((((((((((...((((.(.....).))))..))))))))))...))))))....----- ( -28.00, z-score = -1.19, R) >droSim1.chr2L 16787101 105 - 22036055 UCUGGCUUUGGCAGCACAUUUCGGCUUUUGAACUUCGACUUGCCU---UCAGUCUCGAUUGUAGUGUCGAUUGGGCUAAUUCGAGGCUGACUUAAGCGGCCUUUUGGG .(..(....(((.((.......(((..(((.....)))...))).---((((((((((...((((.(.....).))))..)))))))))).....)).)))..)..). ( -32.90, z-score = -1.24, R) >droSec1.super_7 734005 105 - 3727775 UCUGACUUUGGGAGCACAACUCGGCUUUUGAACUUCGACUUGCCU---UCAGUCUCGAUUGUAGUGUCGAUUGGGCUAAUUCGAGGCUGACUUAAGCGGCCUUUUGGG .....((..(((.((.......(((..(((.....)))...))).---((((((((((...((((.(.....).))))..)))))))))).....))..)))...)). ( -31.30, z-score = -0.94, R) >droYak2.chr2R 17142216 108 + 21139217 UCUGACUUUGGGAGCACAUUUCGGCUUUUGAACUUCGACAUGCCUUCUUCAGUCUCGAUUGUAGUGUCGAUUGAGCCAAUUCGAGGCUGAUUUAAACGGCCUUUUGGG ...((((..(((((..(((.((((..........)))).))).)))))..))))(((((((......))))))).((((...(((((((.......))))))))))). ( -30.10, z-score = -0.98, R) >droEre2.scaffold_4845 15454675 105 + 22589142 UCUCACUUUGGGAGCGCAUUUCGGCUUUUGAACUUCGACUUGCCU---UCAGUCUCGAUUGUAGUGUCGAUUGAGCUAAUUCGAGGCUGAUUUAAACGGCCUUUUGGG .......(..((((.((.....(((..(((.....)))...))).---((((((((((...((((.((....))))))..))))))))))........))))))..). ( -31.30, z-score = -1.48, R) >droAna3.scaffold_12916 12433078 99 + 16180835 -----CCUCGAUUUCCCUCGGCCUCCUCCGAAAUCGGGUCCAACG---UCAGUCUCGAUUUUGGCGUCGAUUUAGCGAAUUCGAGACUUCAUUUUGCGGAUUUUUUU- -----.(((((.((((.(((((.....(((((((((((.(.....---...).))))))))))).)))))....).))).)))))......................- ( -26.50, z-score = -0.40, R) >consensus UCUGACUUUGGGAGCACAUUUCGGCUUUUGAACUUCGACUUGCCU___UCAGUCUCGAUUGUAGUGUCGAUUGAGCUAAUUCGAGGCUGAUUUAAGCGGCCUUUUGGG .............((.......(((..(((.....)))...)))....((((((((((...((((.........))))..))))))))))........))........ (-20.19 = -19.67 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:15 2011