| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,095,859 – 17,095,909 |
| Length | 50 |
| Max. P | 0.982738 |
| Location | 17,095,859 – 17,095,909 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 94.00 |
| Shannon entropy | 0.08680 |
| G+C content | 0.33333 |
| Mean single sequence MFE | -9.23 |
| Consensus MFE | -9.89 |
| Energy contribution | -9.23 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.50 |
| Structure conservation index | 1.07 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.11 |
| SVM RNA-class probability | 0.982738 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17095859 50 - 23011544 AUUUUUAUGGUGAAUCUGUGGCUUCCUAAAGUGUUACCAAAUAGCUAUGA ....(((((((......(((((..........)))))......))))))) ( -8.10, z-score = -0.65, R) >droSim1.chr2L 16780129 50 - 22036055 AUUUUUAUGGCGAAUCUGUGGCUUCCUAAAAUGUUACCAAAUAGCUAUGA ....(((((((......(((((..........)))))......))))))) ( -9.70, z-score = -1.57, R) >droSec1.super_7 727410 50 - 3727775 AUUUUUAUAGCGAAUCUGUGGCUUCCUAAACUGUUACCAAAUAGCUAUAA ....(((((((......(((((..........)))))......))))))) ( -9.90, z-score = -2.27, R) >consensus AUUUUUAUGGCGAAUCUGUGGCUUCCUAAAAUGUUACCAAAUAGCUAUGA ....(((((((......(((((..........)))))......))))))) ( -9.89 = -9.23 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:10 2011