| Sequence ID | dm3.chr2L |
|---|---|
| Location | 17,093,474 – 17,093,541 |
| Length | 67 |
| Max. P | 0.591771 |
| Location | 17,093,474 – 17,093,541 |
|---|---|
| Length | 67 |
| Sequences | 6 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 80.91 |
| Shannon entropy | 0.33786 |
| G+C content | 0.47588 |
| Mean single sequence MFE | -19.56 |
| Consensus MFE | -12.78 |
| Energy contribution | -12.40 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.591771 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 17093474 67 + 23011544 CUCCUCCAGCUGCGU---UUUUCA--UCCAUAUGCAGGCGGAAGUGUAUACAUGUGUACG-CCUGCAUGUUUU ...............---......--...(((((((((((...(((....))).....))-)))))))))... ( -20.20, z-score = -2.20, R) >droAna3.scaffold_12916 12425265 72 - 16180835 -UGCGCUGGCAGCCUCCAUUUUUUAUUCCAUAGGCAGGCGGAUGUUUCUGCAUGUGUGGGUCCUGCAGAUCUU -.......((((..(((((..............(((.(((((....))))).))))))))..))))....... ( -18.03, z-score = 1.19, R) >droEre2.scaffold_4845 15445810 69 - 22589142 -UCCUCCAGCUGCCUCCAGUUGUA--UCCAUAUGCAGGCGGAAGUGUGUACAUGUGUACG-ACUGCAUAUUUU -...............((((((((--..(((.((((.((....)).)))).)))..))))-))))........ ( -23.40, z-score = -2.77, R) >droYak2.chr2R 17133316 65 - 21139217 -UCCUCCAACUGCCU---GUAGUC--UCCAUAUGC-GACGGAAGUGUAUACAUGUGUACG-ACUGCAUAUUUU -.............(---((((((--..((((((.-.((....)).....))))))...)-))))))...... ( -15.30, z-score = -1.35, R) >droSec1.super_7 725045 66 + 3727775 -UCCUCCAGCUGCGU---UUUUCA--UCCAUAUGCAGGCGGAAGUGUAUACAUGUGUACG-CCUGCAUGUUUU -..............---......--...(((((((((((...(((....))).....))-)))))))))... ( -20.20, z-score = -2.23, R) >droSim1.chr2L 16777734 66 + 22036055 -UCCUCCAGCUGCGU---UUUUCA--UCCAUAUGCAGGCGGAAGUGUAUACAUGUGUACG-CCUGCAUGUUUU -..............---......--...(((((((((((...(((....))).....))-)))))))))... ( -20.20, z-score = -2.23, R) >consensus _UCCUCCAGCUGCCU___UUUUCA__UCCAUAUGCAGGCGGAAGUGUAUACAUGUGUACG_CCUGCAUAUUUU .............................((((((((((....))(((((....)))))...))))))))... (-12.78 = -12.40 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:47:09 2011